Strain Fitness in Dechlorosoma suillum PS around Dsui_1246

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1245 and Dsui_1246 are separated by 71 nucleotidesDsui_1246 and Dsui_1247 are separated by 189 nucleotides Dsui_1245: Dsui_1245 - arginine/lysine/ornithine decarboxylase, at 1,305,441 to 1,307,681 _1245 Dsui_1246: Dsui_1246 - deoxycytidine triphosphate deaminase, at 1,307,753 to 1,308,319 _1246 Dsui_1247: Dsui_1247 - ATPase involved in chromosome partitioning, at 1,308,509 to 1,309,603 _1247 Position (kb) 1307 1308 1309Strain fitness (log2 ratio) -2 -1 0 1at 1307.725 kb on - strandat 1307.729 kb on + strandat 1307.750 kb on - strandat 1308.336 kb on - strandat 1308.336 kb on - strandat 1308.362 kb on + strandat 1308.362 kb on + strandat 1308.362 kb on + strandat 1308.362 kb on + strandat 1308.362 kb on + strandat 1308.362 kb on + strandat 1308.370 kb on - strandat 1308.370 kb on - strandat 1308.370 kb on - strandat 1308.370 kb on - strandat 1308.370 kb on - strandat 1308.400 kb on + strandat 1308.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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1,307,725 - -1.7
1,307,729 + +0.9
1,307,750 - -0.3
1,308,336 - -1.5
1,308,336 - -0.4
1,308,362 + -0.7
1,308,362 + +0.9
1,308,362 + -0.1
1,308,362 + -0.1
1,308,362 + -0.9
1,308,362 + -0.1
1,308,370 - -2.4
1,308,370 - -1.3
1,308,370 - -0.5
1,308,370 - -1.4
1,308,370 - -0.2
1,308,400 + -0.7
1,308,485 - +0.0

Or see this region's nucleotide sequence