Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1046 and Dsui_1047 are separated by 3 nucleotides Dsui_1047 and Dsui_1048 are separated by 328 nucleotides Dsui_1048 and Dsui_1049 are separated by 170 nucleotides Dsui_1049 and Dsui_1050 are separated by 38 nucleotides
Dsui_1046: Dsui_1046 - hypothetical protein, at 1,079,323 to 1,080,141
_1046
Dsui_1047: Dsui_1047 - Rhodanese-related sulfurtransferase, at 1,080,145 to 1,080,597
_1047
Dsui_1048: Dsui_1048 - glutamine synthetase, type I, at 1,080,926 to 1,082,338
_1048
Dsui_1049: Dsui_1049 - hypothetical protein, at 1,082,509 to 1,083,009
_1049
Dsui_1050: Dsui_1050 - signal transduction histidine kinase, nitrogen specific, at 1,083,048 to 1,084,103
_1050
Position (kb)
1080
1081
1082
1083 Strain fitness (log2 ratio)
-2
-1
0
1 at 1080.143 kb on + strand at 1080.241 kb on + strand, within Dsui_1047 at 1080.249 kb on + strand, within Dsui_1047 at 1080.250 kb on - strand, within Dsui_1047 at 1080.386 kb on + strand, within Dsui_1047 at 1080.434 kb on + strand, within Dsui_1047 at 1080.442 kb on - strand, within Dsui_1047 at 1080.442 kb on - strand, within Dsui_1047 at 1080.447 kb on - strand, within Dsui_1047 at 1080.457 kb on - strand, within Dsui_1047 at 1080.464 kb on + strand, within Dsui_1047 at 1080.506 kb on - strand, within Dsui_1047 at 1080.530 kb on + strand, within Dsui_1047 at 1080.538 kb on - strand, within Dsui_1047 at 1080.554 kb on + strand at 1080.630 kb on + strand at 1080.681 kb on + strand at 1080.705 kb on + strand at 1080.705 kb on + strand at 1080.713 kb on - strand at 1080.713 kb on - strand at 1080.852 kb on - strand at 1082.331 kb on + strand at 1082.331 kb on + strand at 1082.432 kb on - strand at 1082.531 kb on + strand at 1082.562 kb on - strand, within Dsui_1049 at 1082.616 kb on + strand, within Dsui_1049 at 1082.621 kb on + strand, within Dsui_1049 at 1082.761 kb on - strand, within Dsui_1049 at 1082.823 kb on - strand, within Dsui_1049 at 1082.853 kb on - strand, within Dsui_1049 at 1082.928 kb on + strand, within Dsui_1049 at 1082.970 kb on + strand at 1082.978 kb on - strand at 1082.978 kb on - strand at 1083.039 kb on - strand at 1083.193 kb on + strand, within Dsui_1050 at 1083.234 kb on - strand, within Dsui_1050 at 1083.245 kb on - strand, within Dsui_1050 at 1083.249 kb on + strand, within Dsui_1050 at 1083.249 kb on + strand at 1083.249 kb on + strand, within Dsui_1050 at 1083.257 kb on - strand, within Dsui_1050 at 1083.266 kb on + strand, within Dsui_1050 at 1083.266 kb on + strand, within Dsui_1050 at 1083.274 kb on - strand, within Dsui_1050
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 1,080,143 + +1.0 1,080,241 + Dsui_1047 0.21 +1.0 1,080,249 + Dsui_1047 0.23 +1.0 1,080,250 - Dsui_1047 0.23 -0.2 1,080,386 + Dsui_1047 0.53 +1.0 1,080,434 + Dsui_1047 0.64 -0.6 1,080,442 - Dsui_1047 0.66 -0.8 1,080,442 - Dsui_1047 0.66 -0.2 1,080,447 - Dsui_1047 0.67 -0.2 1,080,457 - Dsui_1047 0.69 +0.5 1,080,464 + Dsui_1047 0.70 +1.0 1,080,506 - Dsui_1047 0.80 -0.4 1,080,530 + Dsui_1047 0.85 +1.0 1,080,538 - Dsui_1047 0.87 +0.0 1,080,554 + -0.6 1,080,630 + +1.0 1,080,681 + -0.0 1,080,705 + +1.0 1,080,705 + -2.3 1,080,713 - -0.0 1,080,713 - +1.0 1,080,852 - +1.0 1,082,331 + -0.2 1,082,331 + +0.1 1,082,432 - -1.8 1,082,531 + -1.4 1,082,562 - Dsui_1049 0.11 +1.0 1,082,616 + Dsui_1049 0.21 -0.3 1,082,621 + Dsui_1049 0.22 -1.1 1,082,761 - Dsui_1049 0.50 -2.3 1,082,823 - Dsui_1049 0.63 -2.0 1,082,853 - Dsui_1049 0.69 +1.0 1,082,928 + Dsui_1049 0.84 -0.8 1,082,970 + -0.2 1,082,978 - -0.0 1,082,978 - -1.0 1,083,039 - -0.6 1,083,193 + Dsui_1050 0.14 +1.0 1,083,234 - Dsui_1050 0.18 -0.0 1,083,245 - Dsui_1050 0.19 +1.0 1,083,249 + Dsui_1050 0.19 +1.6 1,083,249 + -0.0 1,083,249 + Dsui_1050 0.19 +1.2 1,083,257 - Dsui_1050 0.20 -1.6 1,083,266 + Dsui_1050 0.21 +1.6 1,083,266 + Dsui_1050 0.21 -1.3 1,083,274 - Dsui_1050 0.21 +1.0
Or see this region's nucleotide sequence