Strain Fitness in Dechlorosoma suillum PS around Dsui_1048

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1046 and Dsui_1047 are separated by 3 nucleotidesDsui_1047 and Dsui_1048 are separated by 328 nucleotidesDsui_1048 and Dsui_1049 are separated by 170 nucleotidesDsui_1049 and Dsui_1050 are separated by 38 nucleotides Dsui_1046: Dsui_1046 - hypothetical protein, at 1,079,323 to 1,080,141 _1046 Dsui_1047: Dsui_1047 - Rhodanese-related sulfurtransferase, at 1,080,145 to 1,080,597 _1047 Dsui_1048: Dsui_1048 - glutamine synthetase, type I, at 1,080,926 to 1,082,338 _1048 Dsui_1049: Dsui_1049 - hypothetical protein, at 1,082,509 to 1,083,009 _1049 Dsui_1050: Dsui_1050 - signal transduction histidine kinase, nitrogen specific, at 1,083,048 to 1,084,103 _1050 Position (kb) 1080 1081 1082 1083Strain fitness (log2 ratio) -2 -1 0 1at 1080.143 kb on + strandat 1080.241 kb on + strand, within Dsui_1047at 1080.249 kb on + strand, within Dsui_1047at 1080.250 kb on - strand, within Dsui_1047at 1080.386 kb on + strand, within Dsui_1047at 1080.434 kb on + strand, within Dsui_1047at 1080.442 kb on - strand, within Dsui_1047at 1080.442 kb on - strand, within Dsui_1047at 1080.447 kb on - strand, within Dsui_1047at 1080.457 kb on - strand, within Dsui_1047at 1080.464 kb on + strand, within Dsui_1047at 1080.506 kb on - strand, within Dsui_1047at 1080.530 kb on + strand, within Dsui_1047at 1080.538 kb on - strand, within Dsui_1047at 1080.554 kb on + strandat 1080.630 kb on + strandat 1080.681 kb on + strandat 1080.705 kb on + strandat 1080.705 kb on + strandat 1080.713 kb on - strandat 1080.713 kb on - strandat 1080.852 kb on - strandat 1082.331 kb on + strandat 1082.331 kb on + strandat 1082.432 kb on - strandat 1082.531 kb on + strandat 1082.562 kb on - strand, within Dsui_1049at 1082.616 kb on + strand, within Dsui_1049at 1082.621 kb on + strand, within Dsui_1049at 1082.761 kb on - strand, within Dsui_1049at 1082.823 kb on - strand, within Dsui_1049at 1082.853 kb on - strand, within Dsui_1049at 1082.928 kb on + strand, within Dsui_1049at 1082.970 kb on + strandat 1082.978 kb on - strandat 1082.978 kb on - strandat 1083.039 kb on - strandat 1083.193 kb on + strand, within Dsui_1050at 1083.234 kb on - strand, within Dsui_1050at 1083.245 kb on - strand, within Dsui_1050at 1083.249 kb on + strand, within Dsui_1050at 1083.249 kb on + strandat 1083.249 kb on + strand, within Dsui_1050at 1083.257 kb on - strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.274 kb on - strand, within Dsui_1050

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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1,080,143 + +1.0
1,080,241 + Dsui_1047 0.21 +1.0
1,080,249 + Dsui_1047 0.23 +1.0
1,080,250 - Dsui_1047 0.23 -0.2
1,080,386 + Dsui_1047 0.53 +1.0
1,080,434 + Dsui_1047 0.64 -0.6
1,080,442 - Dsui_1047 0.66 -0.8
1,080,442 - Dsui_1047 0.66 -0.2
1,080,447 - Dsui_1047 0.67 -0.2
1,080,457 - Dsui_1047 0.69 +0.5
1,080,464 + Dsui_1047 0.70 +1.0
1,080,506 - Dsui_1047 0.80 -0.4
1,080,530 + Dsui_1047 0.85 +1.0
1,080,538 - Dsui_1047 0.87 +0.0
1,080,554 + -0.6
1,080,630 + +1.0
1,080,681 + -0.0
1,080,705 + +1.0
1,080,705 + -2.3
1,080,713 - -0.0
1,080,713 - +1.0
1,080,852 - +1.0
1,082,331 + -0.2
1,082,331 + +0.1
1,082,432 - -1.8
1,082,531 + -1.4
1,082,562 - Dsui_1049 0.11 +1.0
1,082,616 + Dsui_1049 0.21 -0.3
1,082,621 + Dsui_1049 0.22 -1.1
1,082,761 - Dsui_1049 0.50 -2.3
1,082,823 - Dsui_1049 0.63 -2.0
1,082,853 - Dsui_1049 0.69 +1.0
1,082,928 + Dsui_1049 0.84 -0.8
1,082,970 + -0.2
1,082,978 - -0.0
1,082,978 - -1.0
1,083,039 - -0.6
1,083,193 + Dsui_1050 0.14 +1.0
1,083,234 - Dsui_1050 0.18 -0.0
1,083,245 - Dsui_1050 0.19 +1.0
1,083,249 + Dsui_1050 0.19 +1.6
1,083,249 + -0.0
1,083,249 + Dsui_1050 0.19 +1.2
1,083,257 - Dsui_1050 0.20 -1.6
1,083,266 + Dsui_1050 0.21 +1.6
1,083,266 + Dsui_1050 0.21 -1.3
1,083,274 - Dsui_1050 0.21 +1.0

Or see this region's nucleotide sequence