Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0999 and Dsui_1000 overlap by 4 nucleotides Dsui_1000 and Dsui_1001 overlap by 4 nucleotides
Dsui_0999: Dsui_0999 - MoxR-like ATPase, at 1,026,735 to 1,027,658
_0999
Dsui_1000: Dsui_1000 - hypothetical protein, at 1,027,655 to 1,028,968
_1000
Dsui_1001: Dsui_1001 - hypothetical protein, at 1,028,965 to 1,030,335
_1001
Position (kb) 1027
1028
1029 Strain fitness (log2 ratio) -2
-1
0
1 at 1026.680 kb on - strand at 1026.752 kb on - strand at 1026.776 kb on - strand at 1026.868 kb on + strand, within Dsui_0999 at 1026.886 kb on - strand at 1026.893 kb on - strand, within Dsui_0999 at 1026.946 kb on + strand, within Dsui_0999 at 1027.019 kb on + strand, within Dsui_0999 at 1027.121 kb on + strand, within Dsui_0999 at 1027.124 kb on - strand at 1027.159 kb on + strand at 1027.247 kb on - strand, within Dsui_0999 at 1027.426 kb on + strand, within Dsui_0999 at 1027.462 kb on + strand, within Dsui_0999 at 1027.468 kb on + strand, within Dsui_0999 at 1027.472 kb on + strand, within Dsui_0999 at 1027.488 kb on + strand, within Dsui_0999 at 1027.491 kb on - strand at 1027.530 kb on - strand at 1027.560 kb on + strand, within Dsui_0999 at 1027.562 kb on - strand at 1027.630 kb on + strand at 1027.850 kb on + strand, within Dsui_1000 at 1027.949 kb on + strand, within Dsui_1000 at 1027.956 kb on + strand, within Dsui_1000 at 1028.249 kb on - strand at 1028.431 kb on - strand, within Dsui_1000 at 1028.441 kb on - strand at 1028.450 kb on + strand at 1028.577 kb on - strand at 1028.602 kb on - strand at 1028.817 kb on + strand, within Dsui_1000 at 1029.089 kb on + strand at 1029.120 kb on - strand, within Dsui_1001 at 1029.130 kb on - strand at 1029.198 kb on + strand, within Dsui_1001 at 1029.203 kb on + strand at 1029.206 kb on - strand, within Dsui_1001 at 1029.216 kb on - strand, within Dsui_1001 at 1029.260 kb on + strand at 1029.339 kb on + strand, within Dsui_1001 at 1029.378 kb on - strand at 1029.389 kb on + strand, within Dsui_1001 at 1029.402 kb on - strand, within Dsui_1001 at 1029.406 kb on + strand, within Dsui_1001 at 1029.475 kb on + strand, within Dsui_1001 at 1029.543 kb on + strand, within Dsui_1001 at 1029.575 kb on - strand, within Dsui_1001 at 1029.599 kb on - strand, within Dsui_1001 at 1029.865 kb on + strand, within Dsui_1001 at 1029.893 kb on + strand, within Dsui_1001 at 1029.968 kb on - strand, within Dsui_1001
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 1,026,680 - -1.3 1,026,752 - +1.0 1,026,776 - +1.0 1,026,868 + Dsui_0999 0.14 -0.6 1,026,886 - +1.0 1,026,893 - Dsui_0999 0.17 +0.0 1,026,946 + Dsui_0999 0.23 -1.0 1,027,019 + Dsui_0999 0.31 +0.0 1,027,121 + Dsui_0999 0.42 -0.6 1,027,124 - +1.0 1,027,159 + +1.0 1,027,247 - Dsui_0999 0.55 +0.0 1,027,426 + Dsui_0999 0.75 +0.0 1,027,462 + Dsui_0999 0.79 +1.0 1,027,468 + Dsui_0999 0.79 +0.0 1,027,472 + Dsui_0999 0.80 -1.6 1,027,488 + Dsui_0999 0.81 -0.6 1,027,491 - +0.0 1,027,530 - +0.0 1,027,560 + Dsui_0999 0.89 +1.0 1,027,562 - +0.0 1,027,630 + +1.0 1,027,850 + Dsui_1000 0.15 -2.4 1,027,949 + Dsui_1000 0.22 -2.3 1,027,956 + Dsui_1000 0.23 -0.6 1,028,249 - +1.0 1,028,431 - Dsui_1000 0.59 -1.3 1,028,441 - +1.0 1,028,450 + +0.0 1,028,577 - +1.0 1,028,602 - +1.0 1,028,817 + Dsui_1000 0.88 +0.0 1,029,089 + +0.0 1,029,120 - Dsui_1001 0.11 +1.0 1,029,130 - +1.0 1,029,198 + Dsui_1001 0.17 +0.0 1,029,203 + +1.0 1,029,206 - Dsui_1001 0.18 -0.6 1,029,216 - Dsui_1001 0.18 -1.3 1,029,260 + +1.0 1,029,339 + Dsui_1001 0.27 +1.0 1,029,378 - -0.6 1,029,389 + Dsui_1001 0.31 -1.0 1,029,402 - Dsui_1001 0.32 +1.0 1,029,406 + Dsui_1001 0.32 -1.3 1,029,475 + Dsui_1001 0.37 +0.0 1,029,543 + Dsui_1001 0.42 -1.0 1,029,575 - Dsui_1001 0.44 +0.0 1,029,599 - Dsui_1001 0.46 +1.0 1,029,865 + Dsui_1001 0.66 +1.0 1,029,893 + Dsui_1001 0.68 -0.6 1,029,968 - Dsui_1001 0.73 +1.0
Or see this region's nucleotide sequence