Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0939 and Dsui_0940 are separated by 93 nucleotides Dsui_0940 and Dsui_0941 are separated by 152 nucleotides Dsui_0941 and Dsui_0942 are separated by 153 nucleotides
Dsui_0939: Dsui_0939 - diguanylate cyclase (GGDEF) domain-containing protein, at 966,373 to 968,235
_0939
Dsui_0940: Dsui_0940 - Nif-specific regulatory protein, at 968,329 to 970,062
_0940
Dsui_0941: Dsui_0941 - nitrogenase-associated protein, at 970,215 to 970,643
_0941
Dsui_0942: Dsui_0942 - hypothetical protein, at 970,797 to 971,366
_0942
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -2
-1
0
1 at 967.415 kb on - strand at 967.503 kb on - strand, within Dsui_0939 at 967.522 kb on - strand, within Dsui_0939 at 967.892 kb on - strand, within Dsui_0939 at 968.254 kb on + strand at 968.277 kb on - strand at 968.368 kb on - strand at 968.383 kb on - strand at 968.489 kb on - strand at 968.612 kb on - strand, within Dsui_0940 at 968.780 kb on + strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.235 kb on - strand, within Dsui_0940 at 969.272 kb on - strand, within Dsui_0940 at 969.281 kb on + strand, within Dsui_0940 at 969.296 kb on + strand at 969.297 kb on - strand, within Dsui_0940 at 969.314 kb on - strand, within Dsui_0940 at 969.396 kb on - strand, within Dsui_0940 at 969.416 kb on + strand, within Dsui_0940 at 969.454 kb on - strand at 969.592 kb on + strand, within Dsui_0940 at 969.602 kb on - strand, within Dsui_0940 at 969.683 kb on + strand, within Dsui_0940 at 969.691 kb on - strand, within Dsui_0940 at 969.691 kb on - strand, within Dsui_0940 at 969.978 kb on - strand at 969.983 kb on - strand at 969.998 kb on + strand at 970.121 kb on - strand at 970.337 kb on + strand at 970.414 kb on + strand, within Dsui_0941 at 970.434 kb on - strand at 970.469 kb on + strand, within Dsui_0941 at 970.581 kb on - strand, within Dsui_0941 at 970.853 kb on - strand at 970.954 kb on + strand, within Dsui_0942 at 970.962 kb on - strand, within Dsui_0942 at 970.977 kb on + strand, within Dsui_0942 at 971.009 kb on + strand, within Dsui_0942 at 971.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 967,415 - +1.0 967,503 - Dsui_0939 0.61 +0.0 967,522 - Dsui_0939 0.62 -1.0 967,892 - Dsui_0939 0.82 -1.0 968,254 + +1.0 968,277 - +1.0 968,368 - +1.0 968,383 - +1.0 968,489 - +1.0 968,612 - Dsui_0940 0.16 -2.3 968,780 + Dsui_0940 0.26 -1.6 969,184 - Dsui_0940 0.49 -1.0 969,184 - Dsui_0940 0.49 -0.6 969,235 - Dsui_0940 0.52 +0.0 969,272 - Dsui_0940 0.54 +1.0 969,281 + Dsui_0940 0.55 +0.0 969,296 + +1.0 969,297 - Dsui_0940 0.56 +1.0 969,314 - Dsui_0940 0.57 +1.0 969,396 - Dsui_0940 0.62 -1.0 969,416 + Dsui_0940 0.63 -1.3 969,454 - +1.0 969,592 + Dsui_0940 0.73 -0.6 969,602 - Dsui_0940 0.73 -1.8 969,683 + Dsui_0940 0.78 +0.0 969,691 - Dsui_0940 0.79 +1.0 969,691 - Dsui_0940 0.79 -0.6 969,978 - +0.0 969,983 - +1.0 969,998 + -1.6 970,121 - +1.0 970,337 + +1.0 970,414 + Dsui_0941 0.46 -2.6 970,434 - +1.0 970,469 + Dsui_0941 0.59 +1.0 970,581 - Dsui_0941 0.85 +1.0 970,853 - +1.0 970,954 + Dsui_0942 0.28 +1.0 970,962 - Dsui_0942 0.29 +1.0 970,977 + Dsui_0942 0.32 +1.0 971,009 + Dsui_0942 0.37 -1.3 971,038 + +1.0
Or see this region's nucleotide sequence