Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0938 and Dsui_0939 are separated by 97 nucleotides Dsui_0939 and Dsui_0940 are separated by 93 nucleotides
Dsui_0938: Dsui_0938 - HD-GYP domain-containing protein, at 965,196 to 966,275
_0938
Dsui_0939: Dsui_0939 - diguanylate cyclase (GGDEF) domain-containing protein, at 966,373 to 968,235
_0939
Dsui_0940: Dsui_0940 - Nif-specific regulatory protein, at 968,329 to 970,062
_0940
Position (kb) 966
967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 965.400 kb on - strand, within Dsui_0938 at 965.404 kb on + strand, within Dsui_0938 at 965.459 kb on + strand, within Dsui_0938 at 965.482 kb on - strand, within Dsui_0938 at 965.486 kb on - strand, within Dsui_0938 at 965.682 kb on + strand, within Dsui_0938 at 965.957 kb on + strand, within Dsui_0938 at 966.020 kb on - strand, within Dsui_0938 at 966.066 kb on - strand, within Dsui_0938 at 966.294 kb on - strand at 966.294 kb on - strand at 966.336 kb on - strand at 966.354 kb on + strand at 966.403 kb on - strand at 966.419 kb on + strand at 966.487 kb on - strand at 966.552 kb on - strand at 966.581 kb on + strand, within Dsui_0939 at 966.711 kb on + strand, within Dsui_0939 at 966.719 kb on - strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.868 kb on - strand at 966.931 kb on - strand at 966.999 kb on - strand at 967.237 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand at 967.250 kb on + strand at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.251 kb on - strand at 967.251 kb on - strand, within Dsui_0939 at 967.415 kb on - strand at 967.503 kb on - strand, within Dsui_0939 at 967.522 kb on - strand, within Dsui_0939 at 967.892 kb on - strand, within Dsui_0939 at 968.254 kb on + strand at 968.277 kb on - strand at 968.368 kb on - strand at 968.383 kb on - strand at 968.489 kb on - strand at 968.612 kb on - strand, within Dsui_0940 at 968.780 kb on + strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.235 kb on - strand, within Dsui_0940
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 965,400 - Dsui_0938 0.19 -1.0 965,404 + Dsui_0938 0.19 -0.3 965,459 + Dsui_0938 0.24 +0.5 965,482 - Dsui_0938 0.26 +1.0 965,486 - Dsui_0938 0.27 +1.0 965,682 + Dsui_0938 0.45 -0.2 965,957 + Dsui_0938 0.70 -0.1 966,020 - Dsui_0938 0.76 -3.1 966,066 - Dsui_0938 0.81 +1.0 966,294 - -0.6 966,294 - -1.6 966,336 - +1.0 966,354 + -1.1 966,403 - +1.0 966,419 + -2.2 966,487 - -1.0 966,552 - +1.0 966,581 + Dsui_0939 0.11 -2.0 966,711 + Dsui_0939 0.18 -1.3 966,719 - Dsui_0939 0.19 +0.0 966,855 + Dsui_0939 0.26 +0.0 966,855 + Dsui_0939 0.26 -0.4 966,868 - +1.0 966,931 - +1.0 966,999 - +1.0 967,237 + Dsui_0939 0.46 +1.0 967,242 + Dsui_0939 0.47 +0.3 967,242 + Dsui_0939 0.47 -2.0 967,242 + Dsui_0939 0.47 +2.2 967,242 + +1.0 967,250 + +0.0 967,250 - Dsui_0939 0.47 +0.0 967,250 - Dsui_0939 0.47 +0.0 967,250 - Dsui_0939 0.47 +0.0 967,250 - Dsui_0939 0.47 -2.3 967,251 - +1.0 967,251 - Dsui_0939 0.47 +0.0 967,415 - +1.0 967,503 - Dsui_0939 0.61 +0.0 967,522 - Dsui_0939 0.62 -1.0 967,892 - Dsui_0939 0.82 -1.0 968,254 + +1.0 968,277 - +1.0 968,368 - +1.0 968,383 - +1.0 968,489 - +1.0 968,612 - Dsui_0940 0.16 -2.3 968,780 + Dsui_0940 0.26 -1.6 969,184 - Dsui_0940 0.49 -1.0 969,184 - Dsui_0940 0.49 -0.6 969,235 - Dsui_0940 0.52 +0.0
Or see this region's nucleotide sequence