Strain Fitness in Dechlorosoma suillum PS around Dsui_0873

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0871 and Dsui_0872 are separated by 137 nucleotidesDsui_0872 and Dsui_0873 are separated by 55 nucleotidesDsui_0873 and Dsui_0874 overlap by 20 nucleotidesDsui_0874 and Dsui_0875 overlap by 17 nucleotides Dsui_0871: Dsui_0871 - hypothetical protein, at 885,813 to 886,133 _0871 Dsui_0872: Dsui_0872 - exodeoxyribonuclease III, at 886,271 to 887,056 _0872 Dsui_0873: Dsui_0873 - orotate phosphoribosyltransferase, at 887,112 to 887,756 _0873 Dsui_0874: Dsui_0874 - hypothetical protein, at 887,737 to 888,453 _0874 Dsui_0875: Dsui_0875 - putative branched-chain amino acid permease (azaleucine resistance), at 888,437 to 889,180 _0875 Position (kb) 887 888Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 886.123 kb on - strandat 886.179 kb on + strandat 886.186 kb on + strandat 886.187 kb on - strandat 886.187 kb on - strandat 886.192 kb on - strandat 886.192 kb on - strandat 886.192 kb on - strandat 886.276 kb on - strandat 886.298 kb on + strandat 886.305 kb on - strandat 886.327 kb on + strandat 886.337 kb on + strandat 886.407 kb on + strandat 886.421 kb on - strand, within Dsui_0872at 886.442 kb on + strand, within Dsui_0872at 886.450 kb on - strand, within Dsui_0872at 886.450 kb on - strand, within Dsui_0872at 886.478 kb on + strand, within Dsui_0872at 886.503 kb on + strand, within Dsui_0872at 886.513 kb on + strand, within Dsui_0872at 886.534 kb on - strand, within Dsui_0872at 886.688 kb on - strand, within Dsui_0872at 886.802 kb on + strand, within Dsui_0872at 886.839 kb on - strand, within Dsui_0872at 886.841 kb on + strand, within Dsui_0872at 886.854 kb on - strand, within Dsui_0872at 886.889 kb on - strand, within Dsui_0872at 886.935 kb on - strand, within Dsui_0872at 886.935 kb on - strand, within Dsui_0872at 886.956 kb on + strand, within Dsui_0872at 887.007 kb on - strandat 887.758 kb on - strandat 887.765 kb on + strandat 887.804 kb on - strandat 887.811 kb on + strand, within Dsui_0874at 887.835 kb on - strand, within Dsui_0874at 887.980 kb on - strand, within Dsui_0874at 888.054 kb on + strand, within Dsui_0874at 888.054 kb on + strand, within Dsui_0874at 888.055 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.074 kb on + strand, within Dsui_0874at 888.074 kb on + strand, within Dsui_0874at 888.074 kb on - strandat 888.074 kb on - strand, within Dsui_0874at 888.074 kb on - strand, within Dsui_0874at 888.081 kb on - strand, within Dsui_0874at 888.102 kb on + strand, within Dsui_0874at 888.188 kb on - strand, within Dsui_0874at 888.238 kb on - strand, within Dsui_0874at 888.238 kb on - strandat 888.240 kb on + strand, within Dsui_0874at 888.304 kb on + strand, within Dsui_0874at 888.340 kb on - strand, within Dsui_0874at 888.342 kb on + strand, within Dsui_0874at 888.369 kb on - strand, within Dsui_0874at 888.409 kb on - strandat 888.411 kb on + strandat 888.417 kb on + strandat 888.426 kb on + strandat 888.518 kb on + strand, within Dsui_0875at 888.623 kb on + strand, within Dsui_0875at 888.646 kb on - strand, within Dsui_0875at 888.666 kb on - strandat 888.725 kb on + strand, within Dsui_0875at 888.725 kb on + strand, within Dsui_0875at 888.725 kb on + strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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886,123 - -4.5
886,179 + -2.4
886,186 + -1.0
886,187 - -1.6
886,187 - -2.6
886,192 - -0.1
886,192 - -0.0
886,192 - -0.4
886,276 - -0.5
886,298 + -0.6
886,305 - -0.4
886,327 + +1.0
886,337 + +1.0
886,407 + +1.0
886,421 - Dsui_0872 0.19 -0.4
886,442 + Dsui_0872 0.22 -0.0
886,450 - Dsui_0872 0.23 -0.4
886,450 - Dsui_0872 0.23 +0.2
886,478 + Dsui_0872 0.26 +1.0
886,503 + Dsui_0872 0.30 +1.0
886,513 + Dsui_0872 0.31 +1.0
886,534 - Dsui_0872 0.33 -1.2
886,688 - Dsui_0872 0.53 -0.4
886,802 + Dsui_0872 0.68 -0.0
886,839 - Dsui_0872 0.72 -2.9
886,841 + Dsui_0872 0.73 +1.0
886,854 - Dsui_0872 0.74 +0.2
886,889 - Dsui_0872 0.79 -0.4
886,935 - Dsui_0872 0.84 -0.3
886,935 - Dsui_0872 0.84 -2.1
886,956 + Dsui_0872 0.87 -1.0
887,007 - -2.2
887,758 - -0.6
887,765 + -1.4
887,804 - -1.4
887,811 + Dsui_0874 0.10 +0.3
887,835 - Dsui_0874 0.14 -1.0
887,980 - Dsui_0874 0.34 -0.6
888,054 + Dsui_0874 0.44 -1.0
888,054 + Dsui_0874 0.44 -0.5
888,055 + Dsui_0874 0.44 -0.4
888,066 + Dsui_0874 0.46 -0.1
888,066 + Dsui_0874 0.46 +0.1
888,066 + Dsui_0874 0.46 -0.1
888,066 + Dsui_0874 0.46 -0.3
888,066 + Dsui_0874 0.46 -0.2
888,074 + Dsui_0874 0.47 -0.2
888,074 + Dsui_0874 0.47 +0.4
888,074 - -0.0
888,074 - Dsui_0874 0.47 -0.6
888,074 - Dsui_0874 0.47 +1.0
888,081 - Dsui_0874 0.48 -0.6
888,102 + Dsui_0874 0.51 +0.2
888,188 - Dsui_0874 0.63 -1.0
888,238 - Dsui_0874 0.70 -0.6
888,238 - +1.0
888,240 + Dsui_0874 0.70 -0.3
888,304 + Dsui_0874 0.79 +0.1
888,340 - Dsui_0874 0.84 -0.0
888,342 + Dsui_0874 0.84 -0.4
888,369 - Dsui_0874 0.88 +1.0
888,409 - -0.6
888,411 + -0.1
888,417 + +0.1
888,426 + +0.1
888,518 + Dsui_0875 0.11 +0.0
888,623 + Dsui_0875 0.25 +0.1
888,646 - Dsui_0875 0.28 +0.2
888,666 - +1.0
888,725 + Dsui_0875 0.39 -0.5
888,725 + Dsui_0875 0.39 -1.6
888,725 + Dsui_0875 0.39 -0.0
888,733 - Dsui_0875 0.40 +1.0
888,733 - Dsui_0875 0.40 +1.0
888,733 - Dsui_0875 0.40 +1.0

Or see this region's nucleotide sequence