Strain Fitness in Dechlorosoma suillum PS around Dsui_0817

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0816 and Dsui_0817 are separated by 55 nucleotidesDsui_0817 and Dsui_0818 are separated by 117 nucleotides Dsui_0816: Dsui_0816 - methionyl-tRNA formyltransferase, at 827,681 to 828,607 _0816 Dsui_0817: Dsui_0817 - peptide deformylase, at 828,663 to 829,166 _0817 Dsui_0818: Dsui_0818 - LysM domain-containing protein, at 829,284 to 830,339 _0818 Position (kb) 828 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 827.709 kb on + strandat 827.709 kb on + strandat 827.717 kb on - strandat 828.639 kb on + strandat 828.639 kb on + strandat 828.639 kb on + strandat 828.639 kb on - strandat 828.639 kb on - strandat 828.639 kb on - strandat 828.644 kb on + strandat 828.644 kb on - strandat 828.647 kb on - strandat 828.647 kb on - strandat 828.652 kb on - strandat 829.151 kb on - strandat 829.155 kb on + strandat 829.163 kb on - strandat 829.189 kb on + strandat 829.225 kb on + strandat 829.225 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.235 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.266 kb on - strandat 829.266 kb on - strandat 829.266 kb on - strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.319 kb on - strandat 829.319 kb on - strandat 829.319 kb on - strandat 829.319 kb on - strandat 829.343 kb on + strandat 829.382 kb on - strandat 829.404 kb on - strand, within Dsui_0818at 829.438 kb on - strand, within Dsui_0818at 829.473 kb on + strand, within Dsui_0818at 829.473 kb on + strand, within Dsui_0818at 829.481 kb on - strand, within Dsui_0818at 829.481 kb on - strand, within Dsui_0818at 829.574 kb on + strand, within Dsui_0818at 829.620 kb on + strand, within Dsui_0818at 829.628 kb on + strand, within Dsui_0818at 829.628 kb on - strand, within Dsui_0818at 829.677 kb on - strand, within Dsui_0818at 829.681 kb on - strand, within Dsui_0818at 829.696 kb on - strand, within Dsui_0818at 829.702 kb on - strand, within Dsui_0818at 829.709 kb on + strand, within Dsui_0818at 829.768 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.806 kb on - strand, within Dsui_0818at 829.806 kb on - strand, within Dsui_0818at 829.852 kb on - strand, within Dsui_0818at 829.852 kb on - strand, within Dsui_0818at 829.863 kb on - strand, within Dsui_0818at 829.864 kb on + strand, within Dsui_0818at 829.880 kb on - strand, within Dsui_0818at 829.880 kb on - strand, within Dsui_0818at 829.887 kb on + strand, within Dsui_0818at 829.911 kb on - strand, within Dsui_0818at 829.911 kb on - strand, within Dsui_0818at 830.014 kb on + strand, within Dsui_0818at 830.015 kb on - strand, within Dsui_0818at 830.017 kb on - strand, within Dsui_0818at 830.043 kb on + strand, within Dsui_0818at 830.050 kb on - strand, within Dsui_0818at 830.064 kb on + strand, within Dsui_0818at 830.064 kb on + strand, within Dsui_0818at 830.072 kb on - strand, within Dsui_0818at 830.103 kb on - strand, within Dsui_0818at 830.103 kb on - strand, within Dsui_0818at 830.103 kb on - strand, within Dsui_0818at 830.111 kb on + strand, within Dsui_0818at 830.111 kb on + strand, within Dsui_0818at 830.111 kb on + strand, within Dsui_0818at 830.147 kb on + strand, within Dsui_0818at 830.147 kb on + strand, within Dsui_0818at 830.155 kb on - strand, within Dsui_0818

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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827,709 + -1.4
827,709 + -2.8
827,717 - +0.5
828,639 + -1.5
828,639 + -3.5
828,639 + -3.0
828,639 - -0.1
828,639 - +0.2
828,639 - -0.6
828,644 + -1.3
828,644 - -0.1
828,647 - -0.2
828,647 - -1.5
828,652 - -1.2
829,151 - -1.0
829,155 + -0.6
829,163 - -1.2
829,189 + -0.0
829,225 + -1.0
829,225 + -0.8
829,232 + +0.1
829,232 + -0.1
829,232 + +0.0
829,232 + -0.4
829,232 + -1.7
829,232 + -0.0
829,232 + -0.5
829,232 + +0.6
829,235 - +0.3
829,240 - +0.2
829,240 - +0.1
829,240 - -0.5
829,240 - -0.2
829,240 - +0.1
829,266 - -0.1
829,266 - +0.1
829,266 - -0.6
829,311 + -0.1
829,311 + -1.5
829,311 + +0.1
829,311 + +0.1
829,311 + -0.0
829,311 + +0.2
829,319 - -0.0
829,319 - -0.5
829,319 - -0.6
829,319 - -0.4
829,343 + -0.1
829,382 - +1.0
829,404 - Dsui_0818 0.11 +1.0
829,438 - Dsui_0818 0.15 +1.0
829,473 + Dsui_0818 0.18 +0.4
829,473 + Dsui_0818 0.18 -0.6
829,481 - Dsui_0818 0.19 -0.6
829,481 - Dsui_0818 0.19 +3.0
829,574 + Dsui_0818 0.27 -1.4
829,620 + Dsui_0818 0.32 -0.6
829,628 + Dsui_0818 0.33 -0.1
829,628 - Dsui_0818 0.33 -0.0
829,677 - Dsui_0818 0.37 -2.8
829,681 - Dsui_0818 0.38 -1.0
829,696 - Dsui_0818 0.39 -1.0
829,702 - Dsui_0818 0.40 -0.0
829,709 + Dsui_0818 0.40 +0.1
829,768 - Dsui_0818 0.46 +1.0
829,792 - Dsui_0818 0.48 +1.0
829,792 - Dsui_0818 0.48 +1.0
829,792 - Dsui_0818 0.48 -0.0
829,792 - Dsui_0818 0.48 +1.0
829,806 - Dsui_0818 0.49 +1.0
829,806 - Dsui_0818 0.49 +1.0
829,852 - Dsui_0818 0.54 -1.3
829,852 - Dsui_0818 0.54 -1.3
829,863 - Dsui_0818 0.55 -1.3
829,864 + Dsui_0818 0.55 +0.1
829,880 - Dsui_0818 0.56 +1.0
829,880 - Dsui_0818 0.56 -0.0
829,887 + Dsui_0818 0.57 -0.1
829,911 - Dsui_0818 0.59 -1.8
829,911 - Dsui_0818 0.59 -1.6
830,014 + Dsui_0818 0.69 -0.0
830,015 - Dsui_0818 0.69 -2.2
830,017 - Dsui_0818 0.69 -0.0
830,043 + Dsui_0818 0.72 +0.1
830,050 - Dsui_0818 0.73 -2.0
830,064 + Dsui_0818 0.74 -0.1
830,064 + Dsui_0818 0.74 -0.3
830,072 - Dsui_0818 0.75 +2.6
830,103 - Dsui_0818 0.78 -1.0
830,103 - Dsui_0818 0.78 -1.0
830,103 - Dsui_0818 0.78 -2.5
830,111 + Dsui_0818 0.78 +0.1
830,111 + Dsui_0818 0.78 -0.1
830,111 + Dsui_0818 0.78 +0.0
830,147 + Dsui_0818 0.82 -2.0
830,147 + Dsui_0818 0.82 -0.0
830,155 - Dsui_0818 0.82 -1.0

Or see this region's nucleotide sequence