Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0758 and Dsui_0759 are separated by 63 nucleotides Dsui_0759 and Dsui_0760 are separated by 7 nucleotides Dsui_0760 and Dsui_0761 are separated by 99 nucleotides Dsui_0761 and Dsui_0762 are separated by 7 nucleotides
Dsui_0758: Dsui_0758 - ATPase component of ABC transporters with duplicated ATPase domain, at 757,333 to 759,237
_0758
Dsui_0759: Dsui_0759 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 759,301 to 760,137
_0759
Dsui_0760: Dsui_0760 - diguanylate cyclase (GGDEF) domain-containing protein, at 760,145 to 762,571
_0760
Dsui_0761: Dsui_0761 - phosphoserine phosphatase/homoserine phosphotransferase, at 762,671 to 763,279
_0761
Dsui_0762: Dsui_0762 - formyltetrahydrofolate deformylase, at 763,287 to 764,147
_0762
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -2
-1
0
1 at 759.167 kb on - strand at 759.207 kb on - strand at 759.268 kb on + strand at 759.294 kb on - strand at 759.380 kb on - strand at 759.387 kb on + strand, within Dsui_0759 at 759.418 kb on - strand, within Dsui_0759 at 759.428 kb on + strand, within Dsui_0759 at 759.454 kb on - strand, within Dsui_0759 at 759.471 kb on - strand, within Dsui_0759 at 759.509 kb on + strand, within Dsui_0759 at 759.516 kb on - strand, within Dsui_0759 at 759.565 kb on - strand, within Dsui_0759 at 759.607 kb on - strand, within Dsui_0759 at 759.665 kb on - strand, within Dsui_0759 at 759.668 kb on + strand, within Dsui_0759 at 759.676 kb on - strand, within Dsui_0759 at 759.713 kb on + strand, within Dsui_0759 at 759.713 kb on + strand, within Dsui_0759 at 759.728 kb on + strand, within Dsui_0759 at 759.812 kb on - strand, within Dsui_0759 at 759.837 kb on + strand, within Dsui_0759 at 759.845 kb on - strand, within Dsui_0759 at 759.878 kb on - strand, within Dsui_0759 at 759.929 kb on + strand, within Dsui_0759 at 759.939 kb on + strand, within Dsui_0759 at 759.986 kb on + strand, within Dsui_0759 at 760.004 kb on - strand, within Dsui_0759 at 760.107 kb on + strand at 760.115 kb on - strand at 760.148 kb on + strand at 760.150 kb on - strand at 760.171 kb on - strand at 760.189 kb on - strand at 760.225 kb on + strand at 760.241 kb on - strand at 760.258 kb on + strand at 760.274 kb on - strand at 760.426 kb on - strand at 760.570 kb on - strand, within Dsui_0760 at 760.572 kb on + strand, within Dsui_0760 at 760.672 kb on - strand, within Dsui_0760 at 760.715 kb on - strand, within Dsui_0760 at 760.904 kb on + strand, within Dsui_0760 at 760.924 kb on - strand at 760.937 kb on + strand, within Dsui_0760 at 761.046 kb on + strand, within Dsui_0760 at 761.073 kb on + strand, within Dsui_0760 at 761.077 kb on + strand, within Dsui_0760 at 761.088 kb on + strand, within Dsui_0760 at 761.165 kb on + strand, within Dsui_0760 at 761.193 kb on + strand, within Dsui_0760 at 761.193 kb on + strand, within Dsui_0760 at 761.193 kb on + strand, within Dsui_0760 at 761.201 kb on - strand at 761.201 kb on - strand, within Dsui_0760 at 761.255 kb on - strand at 761.278 kb on + strand, within Dsui_0760 at 761.278 kb on + strand, within Dsui_0760 at 761.286 kb on - strand, within Dsui_0760 at 761.319 kb on - strand, within Dsui_0760 at 761.319 kb on - strand at 761.319 kb on - strand, within Dsui_0760 at 761.397 kb on + strand, within Dsui_0760 at 761.652 kb on + strand at 761.660 kb on - strand, within Dsui_0760 at 761.660 kb on - strand, within Dsui_0760 at 761.744 kb on - strand at 761.823 kb on - strand at 761.848 kb on - strand, within Dsui_0760 at 761.946 kb on + strand, within Dsui_0760 at 762.012 kb on - strand at 762.013 kb on - strand at 762.124 kb on - strand, within Dsui_0760 at 762.150 kb on - strand, within Dsui_0760 at 762.157 kb on + strand, within Dsui_0760 at 762.212 kb on - strand, within Dsui_0760 at 762.230 kb on - strand at 762.267 kb on + strand at 762.307 kb on + strand at 762.473 kb on - strand at 762.507 kb on - strand at 762.528 kb on + strand at 762.608 kb on + strand at 762.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 759,167 - -1.1 759,207 - -0.1 759,268 + +0.0 759,294 - +0.9 759,380 - +0.9 759,387 + Dsui_0759 0.10 -0.2 759,418 - Dsui_0759 0.14 -0.6 759,428 + Dsui_0759 0.15 +0.0 759,454 - Dsui_0759 0.18 -0.1 759,471 - Dsui_0759 0.20 -2.1 759,509 + Dsui_0759 0.25 -0.2 759,516 - Dsui_0759 0.26 -0.1 759,565 - Dsui_0759 0.32 -1.9 759,607 - Dsui_0759 0.37 -0.6 759,665 - Dsui_0759 0.43 -2.2 759,668 + Dsui_0759 0.44 +0.6 759,676 - Dsui_0759 0.45 -0.1 759,713 + Dsui_0759 0.49 -0.2 759,713 + Dsui_0759 0.49 +0.1 759,728 + Dsui_0759 0.51 +0.1 759,812 - Dsui_0759 0.61 -1.1 759,837 + Dsui_0759 0.64 -1.4 759,845 - Dsui_0759 0.65 -0.1 759,878 - Dsui_0759 0.69 +0.9 759,929 + Dsui_0759 0.75 -0.2 759,939 + Dsui_0759 0.76 -2.0 759,986 + Dsui_0759 0.82 -0.6 760,004 - Dsui_0759 0.84 +0.9 760,107 + -0.8 760,115 - +0.9 760,148 + -0.1 760,150 - +0.9 760,171 - -0.6 760,189 - -1.4 760,225 + -1.3 760,241 - +0.9 760,258 + -1.3 760,274 - -1.4 760,426 - +0.9 760,570 - Dsui_0760 0.18 -1.6 760,572 + Dsui_0760 0.18 -1.1 760,672 - Dsui_0760 0.22 -1.6 760,715 - Dsui_0760 0.23 +0.9 760,904 + Dsui_0760 0.31 -0.3 760,924 - +0.9 760,937 + Dsui_0760 0.33 -0.5 761,046 + Dsui_0760 0.37 -1.0 761,073 + Dsui_0760 0.38 -0.3 761,077 + Dsui_0760 0.38 +0.2 761,088 + Dsui_0760 0.39 -0.1 761,165 + Dsui_0760 0.42 +0.1 761,193 + Dsui_0760 0.43 -1.5 761,193 + Dsui_0760 0.43 +0.3 761,193 + Dsui_0760 0.43 +0.5 761,201 - +0.9 761,201 - Dsui_0760 0.44 +0.9 761,255 - -0.1 761,278 + Dsui_0760 0.47 -0.1 761,278 + Dsui_0760 0.47 -1.4 761,286 - Dsui_0760 0.47 -0.6 761,319 - Dsui_0760 0.48 +0.9 761,319 - +0.9 761,319 - Dsui_0760 0.48 -0.6 761,397 + Dsui_0760 0.52 -0.6 761,652 + -1.1 761,660 - Dsui_0760 0.62 -0.1 761,660 - Dsui_0760 0.62 -0.6 761,744 - -0.1 761,823 - +0.9 761,848 - Dsui_0760 0.70 +0.9 761,946 + Dsui_0760 0.74 +1.0 762,012 - +0.9 762,013 - +0.9 762,124 - Dsui_0760 0.82 -0.1 762,150 - Dsui_0760 0.83 -1.4 762,157 + Dsui_0760 0.83 +0.2 762,212 - Dsui_0760 0.85 +0.2 762,230 - +0.9 762,267 + -0.6 762,307 + +0.9 762,473 - +0.9 762,507 - +0.9 762,528 + -1.1 762,608 + +0.9 762,615 + -1.6
Or see this region's nucleotide sequence