Strain Fitness in Dechlorosoma suillum PS around Dsui_0083

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0082 and Dsui_0083 are separated by 2 nucleotidesDsui_0083 and Dsui_0084 are separated by 10 nucleotides Dsui_0082: Dsui_0082 - UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase, at 79,093 to 80,253 _0082 Dsui_0083: Dsui_0083 - UDP-N-acetylglucosamine 4,6-dehydratase, at 80,256 to 81,254 _0083 Dsui_0084: Dsui_0084 - ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain, at 81,265 to 83,040 _0084 Position (kb) 80 81 82Strain fitness (log2 ratio) -1 0 1at 80.295 kb on + strandat 80.298 kb on - strandat 80.344 kb on - strandat 80.346 kb on + strandat 80.346 kb on + strandat 80.353 kb on - strandat 80.354 kb on - strandat 80.354 kb on - strandat 80.413 kb on + strand, within Dsui_0083at 80.422 kb on + strand, within Dsui_0083at 80.459 kb on - strand, within Dsui_0083at 80.470 kb on + strand, within Dsui_0083at 80.472 kb on + strand, within Dsui_0083at 80.472 kb on - strand, within Dsui_0083at 80.534 kb on - strand, within Dsui_0083at 80.550 kb on - strand, within Dsui_0083at 80.561 kb on + strand, within Dsui_0083at 80.615 kb on + strand, within Dsui_0083at 80.628 kb on - strand, within Dsui_0083at 80.628 kb on - strand, within Dsui_0083at 80.630 kb on + strand, within Dsui_0083at 80.630 kb on + strand, within Dsui_0083at 80.642 kb on + strand, within Dsui_0083at 80.642 kb on + strand, within Dsui_0083at 80.664 kb on + strand, within Dsui_0083at 80.690 kb on + strand, within Dsui_0083at 80.708 kb on - strand, within Dsui_0083at 80.730 kb on - strand, within Dsui_0083at 80.845 kb on + strand, within Dsui_0083at 80.860 kb on - strand, within Dsui_0083at 80.863 kb on + strand, within Dsui_0083at 80.863 kb on + strand, within Dsui_0083at 80.871 kb on - strand, within Dsui_0083at 80.887 kb on + strand, within Dsui_0083at 80.888 kb on - strand, within Dsui_0083at 80.931 kb on - strand, within Dsui_0083at 80.976 kb on + strand, within Dsui_0083at 80.976 kb on + strand, within Dsui_0083at 80.979 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.984 kb on - strand, within Dsui_0083at 80.986 kb on + strand, within Dsui_0083at 81.010 kb on + strand, within Dsui_0083at 81.010 kb on + strand, within Dsui_0083at 81.033 kb on + strand, within Dsui_0083at 81.166 kb on + strandat 81.172 kb on + strandat 81.174 kb on - strandat 81.174 kb on - strandat 81.251 kb on + strandat 81.290 kb on - strandat 81.322 kb on - strandat 81.374 kb on - strandat 81.392 kb on + strandat 81.395 kb on + strandat 81.403 kb on - strandat 81.490 kb on - strand, within Dsui_0084at 81.490 kb on - strand, within Dsui_0084at 81.492 kb on - strand, within Dsui_0084at 81.492 kb on - strand, within Dsui_0084at 81.583 kb on - strand, within Dsui_0084at 81.712 kb on - strand, within Dsui_0084at 81.765 kb on + strand, within Dsui_0084at 81.799 kb on + strand, within Dsui_0084at 81.817 kb on + strand, within Dsui_0084at 81.825 kb on - strand, within Dsui_0084at 81.859 kb on - strand, within Dsui_0084at 81.893 kb on + strand, within Dsui_0084at 81.976 kb on + strand, within Dsui_0084at 81.998 kb on + strand, within Dsui_0084at 82.012 kb on - strand, within Dsui_0084at 82.115 kb on + strand, within Dsui_0084at 82.178 kb on - strand, within Dsui_0084at 82.183 kb on - strand, within Dsui_0084at 82.188 kb on + strand, within Dsui_0084at 82.207 kb on + strand, within Dsui_0084

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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80,295 + +1.0
80,298 - +0.5
80,344 - +1.3
80,346 + +1.0
80,346 + +1.0
80,353 - +1.4
80,354 - +1.1
80,354 - +1.2
80,413 + Dsui_0083 0.16 +1.0
80,422 + Dsui_0083 0.17 -0.6
80,459 - Dsui_0083 0.20 +1.2
80,470 + Dsui_0083 0.21 +1.0
80,472 + Dsui_0083 0.22 -1.6
80,472 - Dsui_0083 0.22 +1.4
80,534 - Dsui_0083 0.28 +1.2
80,550 - Dsui_0083 0.29 +1.3
80,561 + Dsui_0083 0.31 -0.6
80,615 + Dsui_0083 0.36 -1.3
80,628 - Dsui_0083 0.37 +0.9
80,628 - Dsui_0083 0.37 +1.0
80,630 + Dsui_0083 0.37 +1.0
80,630 + Dsui_0083 0.37 -0.6
80,642 + Dsui_0083 0.39 +1.0
80,642 + Dsui_0083 0.39 -1.3
80,664 + Dsui_0083 0.41 +1.0
80,690 + Dsui_0083 0.43 -1.3
80,708 - Dsui_0083 0.45 +0.9
80,730 - Dsui_0083 0.47 +1.2
80,845 + Dsui_0083 0.59 +1.0
80,860 - Dsui_0083 0.60 +0.9
80,863 + Dsui_0083 0.61 -0.6
80,863 + Dsui_0083 0.61 +1.0
80,871 - Dsui_0083 0.62 +0.8
80,887 + Dsui_0083 0.63 +0.0
80,888 - Dsui_0083 0.63 +0.9
80,931 - Dsui_0083 0.68 +1.3
80,976 + Dsui_0083 0.72 +1.0
80,976 + Dsui_0083 0.72 -0.6
80,979 - Dsui_0083 0.72 +1.3
80,984 - Dsui_0083 0.73 +1.1
80,984 - Dsui_0083 0.73 +0.3
80,984 - Dsui_0083 0.73 +1.2
80,984 - Dsui_0083 0.73 +1.2
80,984 - Dsui_0083 0.73 +1.3
80,986 + Dsui_0083 0.73 +1.0
81,010 + Dsui_0083 0.75 +1.0
81,010 + Dsui_0083 0.75 +1.0
81,033 + Dsui_0083 0.78 +1.0
81,166 + +1.0
81,172 + -0.4
81,174 - +1.2
81,174 - +1.1
81,251 + +1.0
81,290 - +0.4
81,322 - -1.1
81,374 - +1.0
81,392 + -0.6
81,395 + +0.0
81,403 - +0.8
81,490 - Dsui_0084 0.13 +0.5
81,490 - Dsui_0084 0.13 +0.2
81,492 - Dsui_0084 0.13 +0.5
81,492 - Dsui_0084 0.13 +0.8
81,583 - Dsui_0084 0.18 +0.6
81,712 - Dsui_0084 0.25 +0.7
81,765 + Dsui_0084 0.28 +1.0
81,799 + Dsui_0084 0.30 -0.6
81,817 + Dsui_0084 0.31 -0.9
81,825 - Dsui_0084 0.32 +0.6
81,859 - Dsui_0084 0.33 +0.7
81,893 + Dsui_0084 0.35 -1.0
81,976 + Dsui_0084 0.40 +0.7
81,998 + Dsui_0084 0.41 +1.0
82,012 - Dsui_0084 0.42 +0.5
82,115 + Dsui_0084 0.48 -0.6
82,178 - Dsui_0084 0.51 +0.7
82,183 - Dsui_0084 0.52 +0.7
82,188 + Dsui_0084 0.52 +0.0
82,207 + Dsui_0084 0.53 +1.0

Or see this region's nucleotide sequence