Strain Fitness in Dechlorosoma suillum PS around Dsui_0071

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0070 and Dsui_0071 overlap by 4 nucleotidesDsui_0071 and Dsui_0072 overlap by 4 nucleotides Dsui_0070: Dsui_0070 - methyltransferase family protein, at 66,662 to 67,888 _0070 Dsui_0071: Dsui_0071 - dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme, at 67,885 to 68,448 _0071 Dsui_0072: Dsui_0072 - CDP-glucose 4,6-dehydratase, at 68,445 to 69,509 _0072 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 66.886 kb on - strand, within Dsui_0070at 66.913 kb on - strand, within Dsui_0070at 66.916 kb on - strand, within Dsui_0070at 66.921 kb on - strand, within Dsui_0070at 66.949 kb on - strand, within Dsui_0070at 67.019 kb on - strand, within Dsui_0070at 67.036 kb on + strand, within Dsui_0070at 67.095 kb on - strand, within Dsui_0070at 67.097 kb on + strand, within Dsui_0070at 67.097 kb on + strand, within Dsui_0070at 67.097 kb on + strand, within Dsui_0070at 67.105 kb on - strand, within Dsui_0070at 67.105 kb on - strand, within Dsui_0070at 67.105 kb on - strand, within Dsui_0070at 67.105 kb on - strand, within Dsui_0070at 67.105 kb on - strand, within Dsui_0070at 67.105 kb on - strand, within Dsui_0070at 67.109 kb on + strand, within Dsui_0070at 67.122 kb on - strand, within Dsui_0070at 67.139 kb on - strand, within Dsui_0070at 67.198 kb on + strand, within Dsui_0070at 67.205 kb on + strand, within Dsui_0070at 67.222 kb on + strand, within Dsui_0070at 67.230 kb on - strand, within Dsui_0070at 67.280 kb on + strand, within Dsui_0070at 67.291 kb on - strand, within Dsui_0070at 67.320 kb on + strand, within Dsui_0070at 67.322 kb on - strand, within Dsui_0070at 67.325 kb on + strand, within Dsui_0070at 67.328 kb on - strand, within Dsui_0070at 67.328 kb on - strand, within Dsui_0070at 67.333 kb on + strand, within Dsui_0070at 67.333 kb on + strand, within Dsui_0070at 67.333 kb on + strand, within Dsui_0070at 67.381 kb on - strand, within Dsui_0070at 67.428 kb on + strand, within Dsui_0070at 67.436 kb on - strand, within Dsui_0070at 67.481 kb on - strand, within Dsui_0070at 67.502 kb on - strand, within Dsui_0070at 67.533 kb on + strand, within Dsui_0070at 67.541 kb on - strand, within Dsui_0070at 67.541 kb on - strand, within Dsui_0070at 67.541 kb on - strand, within Dsui_0070at 67.541 kb on - strand, within Dsui_0070at 67.541 kb on - strand, within Dsui_0070at 67.638 kb on + strand, within Dsui_0070at 67.638 kb on + strand, within Dsui_0070at 67.645 kb on - strand, within Dsui_0070at 67.647 kb on - strand, within Dsui_0070at 67.690 kb on - strand, within Dsui_0070at 67.690 kb on - strand, within Dsui_0070at 67.723 kb on + strand, within Dsui_0070at 67.736 kb on - strand, within Dsui_0070at 67.803 kb on + strandat 67.811 kb on - strandat 67.820 kb on + strandat 67.825 kb on + strandat 67.833 kb on - strandat 67.853 kb on - strandat 67.874 kb on - strandat 67.890 kb on + strandat 67.890 kb on + strandat 67.899 kb on + strandat 67.907 kb on - strandat 67.956 kb on - strand, within Dsui_0071at 67.962 kb on - strand, within Dsui_0071at 67.991 kb on + strand, within Dsui_0071at 67.994 kb on - strand, within Dsui_0071at 68.012 kb on + strand, within Dsui_0071at 68.012 kb on + strand, within Dsui_0071at 68.012 kb on + strand, within Dsui_0071at 68.013 kb on - strand, within Dsui_0071at 68.026 kb on + strand, within Dsui_0071at 68.062 kb on + strand, within Dsui_0071at 68.083 kb on + strand, within Dsui_0071at 68.086 kb on - strand, within Dsui_0071at 68.089 kb on + strand, within Dsui_0071at 68.108 kb on + strand, within Dsui_0071at 68.108 kb on + strand, within Dsui_0071at 68.109 kb on - strand, within Dsui_0071at 68.168 kb on + strand, within Dsui_0071at 68.170 kb on - strand, within Dsui_0071at 68.176 kb on - strand, within Dsui_0071at 68.176 kb on - strand, within Dsui_0071at 68.184 kb on - strand, within Dsui_0071at 68.184 kb on - strand, within Dsui_0071at 68.280 kb on + strand, within Dsui_0071at 68.280 kb on + strand, within Dsui_0071at 68.280 kb on + strand, within Dsui_0071at 68.281 kb on + strand, within Dsui_0071at 68.281 kb on + strand, within Dsui_0071at 68.286 kb on + strand, within Dsui_0071at 68.288 kb on - strand, within Dsui_0071at 68.288 kb on - strand, within Dsui_0071at 68.289 kb on - strand, within Dsui_0071at 68.289 kb on - strand, within Dsui_0071at 68.299 kb on - strand, within Dsui_0071at 68.355 kb on + strand, within Dsui_0071at 68.366 kb on - strand, within Dsui_0071at 68.439 kb on - strandat 68.454 kb on - strandat 68.489 kb on + strandat 68.489 kb on + strandat 68.489 kb on + strandat 68.497 kb on - strandat 68.500 kb on + strandat 68.533 kb on - strandat 68.565 kb on + strand, within Dsui_0072at 68.593 kb on + strand, within Dsui_0072at 68.721 kb on - strand, within Dsui_0072at 68.766 kb on + strand, within Dsui_0072at 68.800 kb on - strand, within Dsui_0072at 68.822 kb on + strand, within Dsui_0072at 68.882 kb on - strand, within Dsui_0072at 68.910 kb on + strand, within Dsui_0072at 68.956 kb on + strand, within Dsui_0072at 68.970 kb on - strand, within Dsui_0072at 69.043 kb on + strand, within Dsui_0072at 69.044 kb on + strand, within Dsui_0072at 69.055 kb on + strand, within Dsui_0072at 69.055 kb on + strand, within Dsui_0072at 69.055 kb on + strand, within Dsui_0072at 69.060 kb on + strand, within Dsui_0072at 69.063 kb on - strand, within Dsui_0072at 69.063 kb on - strand, within Dsui_0072at 69.063 kb on - strand, within Dsui_0072at 69.068 kb on + strand, within Dsui_0072at 69.068 kb on + strand, within Dsui_0072at 69.076 kb on - strand, within Dsui_0072at 69.081 kb on - strand, within Dsui_0072at 69.087 kb on - strand, within Dsui_0072at 69.087 kb on - strand, within Dsui_0072at 69.134 kb on - strand, within Dsui_0072at 69.134 kb on - strand, within Dsui_0072at 69.141 kb on - strand, within Dsui_0072at 69.142 kb on - strand, within Dsui_0072at 69.160 kb on + strand, within Dsui_0072at 69.168 kb on - strand, within Dsui_0072at 69.168 kb on - strand, within Dsui_0072at 69.172 kb on - strand, within Dsui_0072at 69.189 kb on - strand, within Dsui_0072at 69.210 kb on - strand, within Dsui_0072at 69.239 kb on - strand, within Dsui_0072at 69.240 kb on - strand, within Dsui_0072at 69.245 kb on - strand, within Dsui_0072at 69.366 kb on - strand, within Dsui_0072at 69.407 kb on - strandat 69.412 kb on + strandat 69.437 kb on - strandat 69.440 kb on + strandat 69.442 kb on - strandat 69.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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66,886 - Dsui_0070 0.18 +1.4
66,913 - Dsui_0070 0.20 +1.4
66,916 - Dsui_0070 0.21 +0.7
66,921 - Dsui_0070 0.21 +1.1
66,949 - Dsui_0070 0.23 +1.5
67,019 - Dsui_0070 0.29 +1.3
67,036 + Dsui_0070 0.30 +0.0
67,095 - Dsui_0070 0.35 +1.5
67,097 + Dsui_0070 0.35 +1.0
67,097 + Dsui_0070 0.35 +0.0
67,097 + Dsui_0070 0.35 +1.0
67,105 - Dsui_0070 0.36 +1.3
67,105 - Dsui_0070 0.36 +1.4
67,105 - Dsui_0070 0.36 +1.4
67,105 - Dsui_0070 0.36 +1.2
67,105 - Dsui_0070 0.36 +1.2
67,105 - Dsui_0070 0.36 +1.5
67,109 + Dsui_0070 0.36 +0.0
67,122 - Dsui_0070 0.37 +1.1
67,139 - Dsui_0070 0.39 +1.3
67,198 + Dsui_0070 0.44 +0.0
67,205 + Dsui_0070 0.44 +1.0
67,222 + Dsui_0070 0.46 +1.0
67,230 - Dsui_0070 0.46 +2.0
67,280 + Dsui_0070 0.50 +1.0
67,291 - Dsui_0070 0.51 +1.3
67,320 + Dsui_0070 0.54 +1.0
67,322 - Dsui_0070 0.54 +1.2
67,325 + Dsui_0070 0.54 +0.0
67,328 - Dsui_0070 0.54 +0.8
67,328 - Dsui_0070 0.54 +1.0
67,333 + Dsui_0070 0.55 +1.0
67,333 + Dsui_0070 0.55 +1.0
67,333 + Dsui_0070 0.55 +0.0
67,381 - Dsui_0070 0.59 +1.3
67,428 + Dsui_0070 0.62 +1.0
67,436 - Dsui_0070 0.63 +1.5
67,481 - Dsui_0070 0.67 +1.0
67,502 - Dsui_0070 0.68 +1.8
67,533 + Dsui_0070 0.71 +0.0
67,541 - Dsui_0070 0.72 +1.4
67,541 - Dsui_0070 0.72 +1.3
67,541 - Dsui_0070 0.72 +1.5
67,541 - Dsui_0070 0.72 +1.2
67,541 - Dsui_0070 0.72 +1.4
67,638 + Dsui_0070 0.80 -1.0
67,638 + Dsui_0070 0.80 +1.0
67,645 - Dsui_0070 0.80 +1.4
67,647 - Dsui_0070 0.80 +0.9
67,690 - Dsui_0070 0.84 +1.3
67,690 - Dsui_0070 0.84 +0.7
67,723 + Dsui_0070 0.86 +1.0
67,736 - Dsui_0070 0.88 +1.0
67,803 + +1.0
67,811 - +1.3
67,820 + +1.0
67,825 + +1.0
67,833 - +1.1
67,853 - +1.2
67,874 - +1.4
67,890 + -0.6
67,890 + +1.0
67,899 + +1.0
67,907 - +0.1
67,956 - Dsui_0071 0.13 +2.0
67,962 - Dsui_0071 0.14 +1.5
67,991 + Dsui_0071 0.19 +0.0
67,994 - Dsui_0071 0.19 +1.3
68,012 + Dsui_0071 0.23 -1.0
68,012 + Dsui_0071 0.23 +0.0
68,012 + Dsui_0071 0.23 +1.0
68,013 - Dsui_0071 0.23 +1.1
68,026 + Dsui_0071 0.25 +1.0
68,062 + Dsui_0071 0.31 -0.6
68,083 + Dsui_0071 0.35 -0.6
68,086 - Dsui_0071 0.36 +1.1
68,089 + Dsui_0071 0.36 +0.0
68,108 + Dsui_0071 0.40 -1.3
68,108 + Dsui_0071 0.40 +1.0
68,109 - Dsui_0071 0.40 +1.1
68,168 + Dsui_0071 0.50 +1.0
68,170 - Dsui_0071 0.51 +1.2
68,176 - Dsui_0071 0.52 +1.0
68,176 - Dsui_0071 0.52 +1.4
68,184 - Dsui_0071 0.53 +1.2
68,184 - Dsui_0071 0.53 +0.8
68,280 + Dsui_0071 0.70 +1.0
68,280 + Dsui_0071 0.70 +0.0
68,280 + Dsui_0071 0.70 +0.0
68,281 + Dsui_0071 0.70 +1.0
68,281 + Dsui_0071 0.70 +1.0
68,286 + Dsui_0071 0.71 -1.6
68,288 - Dsui_0071 0.71 +0.5
68,288 - Dsui_0071 0.71 +1.4
68,289 - Dsui_0071 0.72 +1.4
68,289 - Dsui_0071 0.72 +1.6
68,299 - Dsui_0071 0.73 +1.4
68,355 + Dsui_0071 0.83 +1.0
68,366 - Dsui_0071 0.85 +1.0
68,439 - +0.4
68,454 - +0.1
68,489 + +0.0
68,489 + +1.0
68,489 + +0.0
68,497 - +1.2
68,500 + +1.0
68,533 - +1.4
68,565 + Dsui_0072 0.11 +0.0
68,593 + Dsui_0072 0.14 +1.0
68,721 - Dsui_0072 0.26 +1.5
68,766 + Dsui_0072 0.30 -0.6
68,800 - Dsui_0072 0.33 +1.3
68,822 + Dsui_0072 0.35 -2.5
68,882 - Dsui_0072 0.41 +1.4
68,910 + Dsui_0072 0.44 +0.0
68,956 + Dsui_0072 0.48 +0.0
68,970 - Dsui_0072 0.49 +1.1
69,043 + Dsui_0072 0.56 -0.6
69,044 + Dsui_0072 0.56 +0.0
69,055 + Dsui_0072 0.57 -1.6
69,055 + Dsui_0072 0.57 -1.6
69,055 + Dsui_0072 0.57 +1.0
69,060 + Dsui_0072 0.58 +1.0
69,063 - Dsui_0072 0.58 +1.6
69,063 - Dsui_0072 0.58 +0.8
69,063 - Dsui_0072 0.58 +1.3
69,068 + Dsui_0072 0.58 +1.0
69,068 + Dsui_0072 0.58 -1.6
69,076 - Dsui_0072 0.59 +1.7
69,081 - Dsui_0072 0.60 +1.4
69,087 - Dsui_0072 0.60 +1.1
69,087 - Dsui_0072 0.60 +1.6
69,134 - Dsui_0072 0.65 +0.8
69,134 - Dsui_0072 0.65 +1.5
69,141 - Dsui_0072 0.65 +1.6
69,142 - Dsui_0072 0.65 +1.1
69,160 + Dsui_0072 0.67 +1.0
69,168 - Dsui_0072 0.68 +1.0
69,168 - Dsui_0072 0.68 +1.5
69,172 - Dsui_0072 0.68 +1.4
69,189 - Dsui_0072 0.70 +1.3
69,210 - Dsui_0072 0.72 +1.1
69,239 - Dsui_0072 0.75 +1.3
69,240 - Dsui_0072 0.75 +1.6
69,245 - Dsui_0072 0.75 +1.3
69,366 - Dsui_0072 0.86 +1.6
69,407 - +1.3
69,412 + +0.0
69,437 - +1.1
69,440 + +1.0
69,442 - +1.4
69,442 - +1.0

Or see this region's nucleotide sequence