Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26300

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26290 and AO353_26295 are separated by 272 nucleotidesAO353_26295 and AO353_26300 are separated by 155 nucleotidesAO353_26300 and AO353_26305 overlap by 4 nucleotidesAO353_26305 and AO353_26310 overlap by 4 nucleotides AO353_26290: AO353_26290 - hypothetical protein, at 5,776,420 to 5,776,698 _26290 AO353_26295: AO353_26295 - hypothetical protein, at 5,776,971 to 5,777,426 _26295 AO353_26300: AO353_26300 - hypothetical protein, at 5,777,582 to 5,778,259 _26300 AO353_26305: AO353_26305 - hypothetical protein, at 5,778,256 to 5,778,876 _26305 AO353_26310: AO353_26310 - hypothetical protein, at 5,778,873 to 5,779,460 _26310 Position (kb) 5777 5778 5779Strain fitness (log2 ratio) -2 -1 0 1 2at 5776.615 kb on - strand, within AO353_26290at 5776.621 kb on + strand, within AO353_26290at 5776.622 kb on - strand, within AO353_26290at 5776.622 kb on - strand, within AO353_26290at 5776.622 kb on - strand, within AO353_26290at 5776.622 kb on - strand, within AO353_26290at 5776.622 kb on - strand, within AO353_26290at 5776.622 kb on - strand, within AO353_26290at 5776.622 kb on - strand, within AO353_26290at 5776.632 kb on + strand, within AO353_26290at 5776.632 kb on + strand, within AO353_26290at 5776.633 kb on - strand, within AO353_26290at 5776.650 kb on - strand, within AO353_26290at 5776.653 kb on + strand, within AO353_26290at 5776.653 kb on + strand, within AO353_26290at 5776.653 kb on + strand, within AO353_26290at 5776.653 kb on + strand, within AO353_26290at 5776.653 kb on + strand, within AO353_26290at 5776.653 kb on + strand, within AO353_26290at 5776.653 kb on + strandat 5776.654 kb on - strand, within AO353_26290at 5776.654 kb on - strand, within AO353_26290at 5776.654 kb on - strand, within AO353_26290at 5776.654 kb on - strand, within AO353_26290at 5776.848 kb on + strandat 5776.849 kb on - strandat 5776.908 kb on + strandat 5776.959 kb on + strandat 5776.960 kb on - strandat 5776.960 kb on - strandat 5776.960 kb on - strandat 5777.017 kb on + strand, within AO353_26295at 5777.034 kb on - strand, within AO353_26295at 5777.034 kb on - strand, within AO353_26295at 5777.043 kb on - strand, within AO353_26295at 5777.077 kb on + strand, within AO353_26295at 5777.077 kb on + strand, within AO353_26295at 5777.077 kb on + strand, within AO353_26295at 5777.077 kb on + strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.078 kb on - strand, within AO353_26295at 5777.081 kb on + strand, within AO353_26295at 5777.081 kb on + strand, within AO353_26295at 5777.081 kb on + strand, within AO353_26295at 5777.081 kb on + strand, within AO353_26295at 5777.082 kb on - strand, within AO353_26295at 5777.082 kb on - strand, within AO353_26295at 5777.082 kb on - strandat 5777.108 kb on + strand, within AO353_26295at 5777.108 kb on + strand, within AO353_26295at 5777.109 kb on - strand, within AO353_26295at 5777.109 kb on - strand, within AO353_26295at 5777.109 kb on - strand, within AO353_26295at 5777.109 kb on - strand, within AO353_26295at 5777.152 kb on + strand, within AO353_26295at 5777.201 kb on + strandat 5777.202 kb on - strand, within AO353_26295at 5777.210 kb on + strand, within AO353_26295at 5777.210 kb on + strand, within AO353_26295at 5777.211 kb on - strand, within AO353_26295at 5777.211 kb on - strand, within AO353_26295at 5777.262 kb on + strand, within AO353_26295at 5777.262 kb on + strand, within AO353_26295at 5777.311 kb on + strand, within AO353_26295at 5777.311 kb on + strand, within AO353_26295at 5777.311 kb on + strand, within AO353_26295at 5777.365 kb on + strand, within AO353_26295at 5777.365 kb on + strand, within AO353_26295at 5777.365 kb on + strand, within AO353_26295at 5777.365 kb on + strand, within AO353_26295at 5777.365 kb on + strand, within AO353_26295at 5777.365 kb on + strand, within AO353_26295at 5777.365 kb on + strand, within AO353_26295at 5777.366 kb on - strand, within AO353_26295at 5777.366 kb on - strand, within AO353_26295at 5777.366 kb on - strand, within AO353_26295at 5777.395 kb on + strandat 5777.396 kb on - strandat 5777.396 kb on - strandat 5777.407 kb on - strandat 5777.439 kb on + strandat 5777.439 kb on + strandat 5777.440 kb on - strandat 5777.440 kb on - strandat 5777.440 kb on - strandat 5777.440 kb on - strandat 5777.553 kb on - strandat 5777.799 kb on + strand, within AO353_26300at 5777.799 kb on + strand, within AO353_26300at 5777.799 kb on + strand, within AO353_26300at 5777.799 kb on + strand, within AO353_26300at 5777.799 kb on + strand, within AO353_26300at 5777.799 kb on + strand, within AO353_26300at 5777.800 kb on - strand, within AO353_26300at 5777.800 kb on - strand, within AO353_26300at 5777.800 kb on - strand, within AO353_26300at 5777.800 kb on - strand, within AO353_26300at 5777.826 kb on + strand, within AO353_26300at 5777.826 kb on + strand, within AO353_26300at 5777.827 kb on - strand, within AO353_26300at 5777.827 kb on - strand, within AO353_26300at 5777.827 kb on - strand, within AO353_26300at 5777.931 kb on + strand, within AO353_26300at 5777.937 kb on + strand, within AO353_26300at 5777.937 kb on + strand, within AO353_26300at 5777.937 kb on + strand, within AO353_26300at 5777.938 kb on - strand, within AO353_26300at 5777.938 kb on - strand, within AO353_26300at 5777.938 kb on - strand, within AO353_26300at 5777.938 kb on - strand, within AO353_26300at 5778.026 kb on - strand, within AO353_26300at 5778.062 kb on - strand, within AO353_26300at 5778.408 kb on - strand, within AO353_26305at 5778.524 kb on + strand, within AO353_26305at 5778.840 kb on + strandat 5778.841 kb on - strandat 5778.841 kb on - strandat 5778.880 kb on + strandat 5778.880 kb on + strandat 5778.880 kb on + strandat 5778.976 kb on + strand, within AO353_26310at 5779.004 kb on + strand, within AO353_26310at 5779.052 kb on + strand, within AO353_26310at 5779.052 kb on + strand, within AO353_26310at 5779.053 kb on - strand, within AO353_26310at 5779.053 kb on - strand, within AO353_26310at 5779.053 kb on - strand, within AO353_26310at 5779.053 kb on - strand, within AO353_26310at 5779.067 kb on - strand, within AO353_26310at 5779.165 kb on + strand, within AO353_26310at 5779.165 kb on + strand, within AO353_26310at 5779.166 kb on - strand, within AO353_26310at 5779.166 kb on - strand, within AO353_26310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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5,776,615 - AO353_26290 0.70 +2.0
5,776,621 + AO353_26290 0.72 -0.4
5,776,622 - AO353_26290 0.72 +0.1
5,776,622 - AO353_26290 0.72 +0.8
5,776,622 - AO353_26290 0.72 -0.6
5,776,622 - AO353_26290 0.72 -1.9
5,776,622 - AO353_26290 0.72 +0.6
5,776,622 - AO353_26290 0.72 +0.4
5,776,622 - AO353_26290 0.72 +0.7
5,776,632 + AO353_26290 0.76 -0.9
5,776,632 + AO353_26290 0.76 -1.4
5,776,633 - AO353_26290 0.76 -0.0
5,776,650 - AO353_26290 0.82 -2.1
5,776,653 + AO353_26290 0.84 +0.4
5,776,653 + AO353_26290 0.84 -1.6
5,776,653 + AO353_26290 0.84 +1.4
5,776,653 + AO353_26290 0.84 -1.9
5,776,653 + AO353_26290 0.84 +1.0
5,776,653 + AO353_26290 0.84 +0.7
5,776,653 + +0.8
5,776,654 - AO353_26290 0.84 +1.1
5,776,654 - AO353_26290 0.84 +0.2
5,776,654 - AO353_26290 0.84 +0.4
5,776,654 - AO353_26290 0.84 +1.6
5,776,848 + -2.2
5,776,849 - -0.6
5,776,908 + -2.3
5,776,959 + -0.3
5,776,960 - -0.6
5,776,960 - -1.5
5,776,960 - -0.5
5,777,017 + AO353_26295 0.10 -1.3
5,777,034 - AO353_26295 0.14 +0.3
5,777,034 - AO353_26295 0.14 -0.6
5,777,043 - AO353_26295 0.16 -0.8
5,777,077 + AO353_26295 0.23 +1.4
5,777,077 + AO353_26295 0.23 -0.2
5,777,077 + AO353_26295 0.23 +0.5
5,777,077 + AO353_26295 0.23 +0.2
5,777,078 - AO353_26295 0.23 -0.6
5,777,078 - AO353_26295 0.23 -0.8
5,777,078 - AO353_26295 0.23 +1.4
5,777,078 - AO353_26295 0.23 -1.0
5,777,078 - AO353_26295 0.23 -0.4
5,777,078 - AO353_26295 0.23 -0.6
5,777,078 - AO353_26295 0.23 +0.4
5,777,078 - AO353_26295 0.23 +1.3
5,777,078 - AO353_26295 0.23 -0.8
5,777,081 + AO353_26295 0.24 +2.2
5,777,081 + AO353_26295 0.24 -1.4
5,777,081 + AO353_26295 0.24 +1.2
5,777,081 + AO353_26295 0.24 -0.4
5,777,082 - AO353_26295 0.24 -0.2
5,777,082 - AO353_26295 0.24 -1.7
5,777,082 - +0.8
5,777,108 + AO353_26295 0.30 -0.2
5,777,108 + AO353_26295 0.30 -1.8
5,777,109 - AO353_26295 0.30 +0.8
5,777,109 - AO353_26295 0.30 -1.5
5,777,109 - AO353_26295 0.30 +0.0
5,777,109 - AO353_26295 0.30 -1.0
5,777,152 + AO353_26295 0.40 -0.3
5,777,201 + -0.2
5,777,202 - AO353_26295 0.51 -0.5
5,777,210 + AO353_26295 0.52 -0.4
5,777,210 + AO353_26295 0.52 +1.5
5,777,211 - AO353_26295 0.53 -2.4
5,777,211 - AO353_26295 0.53 -0.4
5,777,262 + AO353_26295 0.64 -0.1
5,777,262 + AO353_26295 0.64 -1.4
5,777,311 + AO353_26295 0.75 +0.1
5,777,311 + AO353_26295 0.75 +0.1
5,777,311 + AO353_26295 0.75 -1.3
5,777,365 + AO353_26295 0.86 +0.2
5,777,365 + AO353_26295 0.86 -0.9
5,777,365 + AO353_26295 0.86 +0.6
5,777,365 + AO353_26295 0.86 -0.0
5,777,365 + AO353_26295 0.86 -1.2
5,777,365 + AO353_26295 0.86 -0.1
5,777,365 + AO353_26295 0.86 +0.2
5,777,366 - AO353_26295 0.87 -0.8
5,777,366 - AO353_26295 0.87 +0.5
5,777,366 - AO353_26295 0.87 -1.2
5,777,395 + -0.5
5,777,396 - -0.6
5,777,396 - -0.5
5,777,407 - +0.6
5,777,439 + +1.8
5,777,439 + -0.4
5,777,440 - -0.5
5,777,440 - -0.8
5,777,440 - +0.3
5,777,440 - +0.8
5,777,553 - -1.5
5,777,799 + AO353_26300 0.32 +0.0
5,777,799 + AO353_26300 0.32 -0.1
5,777,799 + AO353_26300 0.32 +0.2
5,777,799 + AO353_26300 0.32 +0.4
5,777,799 + AO353_26300 0.32 +0.0
5,777,799 + AO353_26300 0.32 +1.1
5,777,800 - AO353_26300 0.32 -0.8
5,777,800 - AO353_26300 0.32 +0.1
5,777,800 - AO353_26300 0.32 -1.0
5,777,800 - AO353_26300 0.32 -0.7
5,777,826 + AO353_26300 0.36 -1.8
5,777,826 + AO353_26300 0.36 -1.4
5,777,827 - AO353_26300 0.36 +0.1
5,777,827 - AO353_26300 0.36 +0.8
5,777,827 - AO353_26300 0.36 -1.3
5,777,931 + AO353_26300 0.51 -0.4
5,777,937 + AO353_26300 0.52 -0.2
5,777,937 + AO353_26300 0.52 -2.0
5,777,937 + AO353_26300 0.52 -1.5
5,777,938 - AO353_26300 0.53 -2.1
5,777,938 - AO353_26300 0.53 -0.3
5,777,938 - AO353_26300 0.53 +0.1
5,777,938 - AO353_26300 0.53 -0.0
5,778,026 - AO353_26300 0.65 -0.9
5,778,062 - AO353_26300 0.71 -0.3
5,778,408 - AO353_26305 0.24 -1.0
5,778,524 + AO353_26305 0.43 -0.2
5,778,840 + +0.4
5,778,841 - +1.6
5,778,841 - -1.0
5,778,880 + -0.9
5,778,880 + -0.2
5,778,880 + -1.0
5,778,976 + AO353_26310 0.18 -0.2
5,779,004 + AO353_26310 0.22 -0.6
5,779,052 + AO353_26310 0.30 -1.6
5,779,052 + AO353_26310 0.30 +0.2
5,779,053 - AO353_26310 0.31 +0.2
5,779,053 - AO353_26310 0.31 -0.2
5,779,053 - AO353_26310 0.31 -1.8
5,779,053 - AO353_26310 0.31 +0.7
5,779,067 - AO353_26310 0.33 +1.3
5,779,165 + AO353_26310 0.50 -0.8
5,779,165 + AO353_26310 0.50 +0.0
5,779,166 - AO353_26310 0.50 +0.4
5,779,166 - AO353_26310 0.50 -0.3

Or see this region's nucleotide sequence