Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02435

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02425 and AO353_02430 are separated by 40 nucleotidesAO353_02430 and AO353_02435 are separated by 40 nucleotidesAO353_02435 and AO353_02440 are separated by 187 nucleotides AO353_02425: AO353_02425 - spermidine/putrescine ABC transporter ATP-binding protein, at 516,460 to 517,464 _02425 AO353_02430: AO353_02430 - HAD family hydrolase, at 517,505 to 518,158 _02430 AO353_02435: AO353_02435 - NAD(P)H-quinone oxidoreductase, at 518,199 to 519,161 _02435 AO353_02440: AO353_02440 - peptidase S41, at 519,349 to 521,469 _02440 Position (kb) 518 519 520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 517.457 kb on + strandat 517.457 kb on + strandat 517.458 kb on - strandat 517.487 kb on - strandat 517.644 kb on - strand, within AO353_02430at 517.644 kb on - strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.929 kb on - strand, within AO353_02430at 517.958 kb on + strand, within AO353_02430at 517.959 kb on - strand, within AO353_02430at 518.033 kb on + strand, within AO353_02430at 518.034 kb on - strand, within AO353_02430at 518.034 kb on - strand, within AO353_02430at 518.197 kb on - strandat 518.512 kb on - strand, within AO353_02435at 518.512 kb on - strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.533 kb on + strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.534 kb on - strand, within AO353_02435at 518.641 kb on + strand, within AO353_02435at 518.642 kb on - strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.700 kb on + strand, within AO353_02435at 518.701 kb on - strand, within AO353_02435at 518.701 kb on - strand, within AO353_02435at 518.701 kb on - strand, within AO353_02435at 518.806 kb on + strand, within AO353_02435at 518.806 kb on + strand, within AO353_02435at 518.806 kb on + strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.807 kb on - strand, within AO353_02435at 518.862 kb on + strand, within AO353_02435at 518.862 kb on + strand, within AO353_02435at 518.862 kb on + strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 518.863 kb on - strand, within AO353_02435at 519.093 kb on + strandat 519.093 kb on + strandat 519.094 kb on - strandat 519.094 kb on - strandat 519.172 kb on + strandat 519.220 kb on + strandat 519.220 kb on + strandat 519.221 kb on - strandat 519.309 kb on + strandat 519.345 kb on + strandat 519.345 kb on + strandat 519.345 kb on + strandat 519.346 kb on - strandat 519.346 kb on - strandat 519.346 kb on - strandat 519.348 kb on + strandat 519.348 kb on + strandat 519.348 kb on + strandat 519.348 kb on + strandat 519.348 kb on + strandat 519.348 kb on + strandat 519.453 kb on + strandat 519.453 kb on + strandat 519.454 kb on - strandat 519.454 kb on - strandat 519.454 kb on - strandat 519.454 kb on - strandat 519.468 kb on + strandat 519.468 kb on + strandat 519.469 kb on - strandat 519.469 kb on - strandat 519.469 kb on - strandat 519.469 kb on - strandat 519.547 kb on + strandat 519.547 kb on + strandat 519.547 kb on + strandat 519.548 kb on - strandat 519.548 kb on - strandat 519.548 kb on - strandat 519.548 kb on - strandat 519.589 kb on + strand, within AO353_02440at 519.589 kb on + strand, within AO353_02440at 519.589 kb on + strand, within AO353_02440at 519.590 kb on - strand, within AO353_02440at 519.590 kb on - strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.598 kb on + strand, within AO353_02440at 519.599 kb on - strand, within AO353_02440at 519.599 kb on - strand, within AO353_02440at 519.599 kb on - strand, within AO353_02440at 519.628 kb on + strand, within AO353_02440at 519.629 kb on - strand, within AO353_02440at 519.724 kb on + strand, within AO353_02440at 519.724 kb on + strand, within AO353_02440at 519.725 kb on - strand, within AO353_02440at 519.725 kb on - strand, within AO353_02440at 519.970 kb on + strand, within AO353_02440at 520.027 kb on + strand, within AO353_02440at 520.027 kb on + strand, within AO353_02440at 520.027 kb on + strand, within AO353_02440at 520.028 kb on - strand, within AO353_02440at 520.028 kb on - strand, within AO353_02440at 520.051 kb on + strand, within AO353_02440at 520.052 kb on - strand, within AO353_02440at 520.052 kb on - strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strandat 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.069 kb on + strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strandat 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440at 520.070 kb on - strand, within AO353_02440

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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517,457 + +0.0
517,457 + +1.3
517,458 - -0.1
517,487 - +1.6
517,644 - AO353_02430 0.21 -1.0
517,644 - AO353_02430 0.21 -0.8
517,673 + AO353_02430 0.26 -1.0
517,673 + AO353_02430 0.26 -0.4
517,673 + AO353_02430 0.26 +0.1
517,673 + AO353_02430 0.26 +0.9
517,673 + AO353_02430 0.26 -0.0
517,673 + AO353_02430 0.26 +0.2
517,673 + AO353_02430 0.26 +0.1
517,674 - AO353_02430 0.26 -2.0
517,674 - AO353_02430 0.26 +0.7
517,674 - AO353_02430 0.26 -2.1
517,674 - AO353_02430 0.26 -0.3
517,674 - AO353_02430 0.26 -0.5
517,674 - AO353_02430 0.26 +0.1
517,674 - AO353_02430 0.26 +0.1
517,674 - AO353_02430 0.26 +1.7
517,674 - AO353_02430 0.26 +0.5
517,674 - AO353_02430 0.26 -0.7
517,674 - AO353_02430 0.26 -0.6
517,674 - AO353_02430 0.26 +0.1
517,674 - AO353_02430 0.26 +0.1
517,674 - AO353_02430 0.26 +0.8
517,674 - AO353_02430 0.26 -1.9
517,902 + AO353_02430 0.61 -3.8
517,902 + AO353_02430 0.61 -1.4
517,902 + AO353_02430 0.61 +0.7
517,903 - AO353_02430 0.61 +1.7
517,903 - AO353_02430 0.61 +0.6
517,903 - AO353_02430 0.61 +0.5
517,903 - AO353_02430 0.61 +0.3
517,903 - AO353_02430 0.61 +1.3
517,903 - AO353_02430 0.61 +0.7
517,903 - AO353_02430 0.61 -0.8
517,903 - AO353_02430 0.61 -2.0
517,903 - AO353_02430 0.61 -0.3
517,928 + AO353_02430 0.65 -0.3
517,928 + AO353_02430 0.65 -0.3
517,928 + AO353_02430 0.65 -1.4
517,929 - AO353_02430 0.65 -0.1
517,958 + AO353_02430 0.69 -1.0
517,959 - AO353_02430 0.69 -0.5
518,033 + AO353_02430 0.81 +0.1
518,034 - AO353_02430 0.81 -0.2
518,034 - AO353_02430 0.81 -0.9
518,197 - -0.2
518,512 - AO353_02435 0.33 -1.4
518,512 - AO353_02435 0.33 +1.7
518,533 + AO353_02435 0.35 -0.3
518,533 + AO353_02435 0.35 -0.4
518,533 + AO353_02435 0.35 +0.6
518,533 + AO353_02435 0.35 -1.5
518,533 + AO353_02435 0.35 +1.0
518,533 + AO353_02435 0.35 -0.5
518,533 + AO353_02435 0.35 -1.4
518,534 - AO353_02435 0.35 +0.7
518,534 - AO353_02435 0.35 +0.3
518,534 - AO353_02435 0.35 -0.2
518,534 - AO353_02435 0.35 -0.0
518,534 - AO353_02435 0.35 -1.6
518,534 - AO353_02435 0.35 -0.1
518,534 - AO353_02435 0.35 +0.5
518,534 - AO353_02435 0.35 +0.6
518,534 - AO353_02435 0.35 -0.9
518,534 - AO353_02435 0.35 -0.1
518,534 - AO353_02435 0.35 +0.3
518,641 + AO353_02435 0.46 -0.5
518,642 - AO353_02435 0.46 -2.5
518,700 + AO353_02435 0.52 -0.7
518,700 + AO353_02435 0.52 -0.0
518,700 + AO353_02435 0.52 +0.7
518,700 + AO353_02435 0.52 +0.5
518,700 + AO353_02435 0.52 -0.6
518,700 + AO353_02435 0.52 -0.2
518,700 + AO353_02435 0.52 +0.9
518,701 - AO353_02435 0.52 -0.5
518,701 - AO353_02435 0.52 -0.3
518,701 - AO353_02435 0.52 -0.5
518,806 + AO353_02435 0.63 +0.6
518,806 + AO353_02435 0.63 -0.7
518,806 + AO353_02435 0.63 +0.3
518,807 - AO353_02435 0.63 +0.4
518,807 - AO353_02435 0.63 -1.5
518,807 - AO353_02435 0.63 -0.8
518,807 - AO353_02435 0.63 -0.9
518,807 - AO353_02435 0.63 -1.7
518,862 + AO353_02435 0.69 -1.1
518,862 + AO353_02435 0.69 -0.9
518,862 + AO353_02435 0.69 +0.6
518,863 - AO353_02435 0.69 -2.3
518,863 - AO353_02435 0.69 -0.4
518,863 - AO353_02435 0.69 -1.1
518,863 - AO353_02435 0.69 +0.1
519,093 + +0.5
519,093 + +0.3
519,094 - -0.5
519,094 - +0.0
519,172 + -1.0
519,220 + +0.2
519,220 + +0.9
519,221 - -1.5
519,309 + +0.3
519,345 + -0.9
519,345 + -1.3
519,345 + -0.4
519,346 - +1.1
519,346 - +0.1
519,346 - +0.1
519,348 + -0.4
519,348 + +0.2
519,348 + +1.9
519,348 + -0.9
519,348 + -0.1
519,348 + +2.5
519,453 + +1.1
519,453 + -0.5
519,454 - -0.8
519,454 - -0.1
519,454 - -0.0
519,454 - -0.3
519,468 + -0.1
519,468 + -1.9
519,469 - -1.2
519,469 - -0.9
519,469 - +0.6
519,469 - -0.3
519,547 + -1.4
519,547 + +0.0
519,547 + +0.6
519,548 - +0.2
519,548 - -1.7
519,548 - +0.4
519,548 - -1.4
519,589 + AO353_02440 0.11 +1.9
519,589 + AO353_02440 0.11 -0.1
519,589 + AO353_02440 0.11 -0.5
519,590 - AO353_02440 0.11 +0.9
519,590 - AO353_02440 0.11 -0.1
519,598 + AO353_02440 0.12 +0.1
519,598 + AO353_02440 0.12 -0.7
519,598 + AO353_02440 0.12 -0.5
519,598 + AO353_02440 0.12 -1.1
519,598 + AO353_02440 0.12 +0.2
519,598 + AO353_02440 0.12 -0.8
519,598 + AO353_02440 0.12 -0.5
519,598 + AO353_02440 0.12 -0.1
519,599 - AO353_02440 0.12 +0.7
519,599 - AO353_02440 0.12 -1.0
519,599 - AO353_02440 0.12 +0.1
519,628 + AO353_02440 0.13 -0.4
519,629 - AO353_02440 0.13 -0.5
519,724 + AO353_02440 0.18 +0.1
519,724 + AO353_02440 0.18 -0.9
519,725 - AO353_02440 0.18 -2.2
519,725 - AO353_02440 0.18 +1.1
519,970 + AO353_02440 0.29 +0.3
520,027 + AO353_02440 0.32 -2.5
520,027 + AO353_02440 0.32 +0.3
520,027 + AO353_02440 0.32 -0.2
520,028 - AO353_02440 0.32 +0.7
520,028 - AO353_02440 0.32 -0.5
520,051 + AO353_02440 0.33 -1.3
520,052 - AO353_02440 0.33 -1.3
520,052 - AO353_02440 0.33 +0.9
520,069 + AO353_02440 0.34 +1.0
520,069 + AO353_02440 0.34 +0.3
520,069 + AO353_02440 0.34 +0.4
520,069 + AO353_02440 0.34 +0.8
520,069 + AO353_02440 0.34 -0.3
520,069 + +0.3
520,069 + AO353_02440 0.34 -0.9
520,069 + AO353_02440 0.34 +1.1
520,069 + AO353_02440 0.34 -1.1
520,069 + AO353_02440 0.34 -1.6
520,069 + AO353_02440 0.34 -1.0
520,069 + AO353_02440 0.34 -0.7
520,070 - AO353_02440 0.34 -0.3
520,070 - AO353_02440 0.34 -1.3
520,070 - AO353_02440 0.34 +0.4
520,070 - AO353_02440 0.34 -0.7
520,070 - AO353_02440 0.34 -1.3
520,070 - +2.9
520,070 - AO353_02440 0.34 +0.6
520,070 - AO353_02440 0.34 -0.3
520,070 - AO353_02440 0.34 -1.3
520,070 - AO353_02440 0.34 -1.8
520,070 - AO353_02440 0.34 +0.3
520,070 - AO353_02440 0.34 -1.3
520,070 - AO353_02440 0.34 -0.7
520,070 - AO353_02440 0.34 -0.3
520,070 - AO353_02440 0.34 -0.3
520,070 - AO353_02440 0.34 -0.4
520,070 - AO353_02440 0.34 +0.2
520,070 - AO353_02440 0.34 -1.4

Or see this region's nucleotide sequence