Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3205 and Dsui_3206 are separated by 80 nucleotides Dsui_3206 and Dsui_3207 overlap by 7 nucleotides Dsui_3207 and Dsui_3208 are separated by 262 nucleotides
Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735
_3205
Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232
_3206
Dsui_3207: Dsui_3207 - ankyrin repeat-containing protein, at 3,442,226 to 3,442,738
_3207
Dsui_3208: Dsui_3208 - cysteine synthase A, at 3,443,001 to 3,443,933
_3208
Position (kb)
3442
3443 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3441.339 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.534 kb on + strand at 3441.534 kb on + strand, within Dsui_3205 at 3441.557 kb on - strand, within Dsui_3205 at 3441.574 kb on - strand, within Dsui_3205 at 3441.614 kb on + strand at 3441.694 kb on - strand at 3441.697 kb on + strand at 3441.697 kb on + strand at 3441.781 kb on - strand at 3441.942 kb on + strand, within Dsui_3206 at 3442.073 kb on + strand, within Dsui_3206 at 3442.081 kb on - strand, within Dsui_3206 at 3442.083 kb on - strand, within Dsui_3206 at 3442.089 kb on - strand, within Dsui_3206 at 3442.159 kb on + strand at 3442.167 kb on - strand, within Dsui_3206 at 3442.484 kb on - strand, within Dsui_3207 at 3442.513 kb on + strand at 3442.522 kb on - strand, within Dsui_3207 at 3442.613 kb on + strand at 3442.621 kb on - strand, within Dsui_3207 at 3442.695 kb on + strand at 3442.728 kb on + strand at 3442.736 kb on - strand at 3442.793 kb on + strand at 3442.828 kb on + strand at 3442.831 kb on - strand at 3442.836 kb on - strand at 3442.836 kb on - strand at 3442.836 kb on - strand at 3442.836 kb on - strand at 3442.844 kb on - strand at 3442.857 kb on + strand at 3442.918 kb on + strand at 3442.956 kb on + strand at 3443.015 kb on + strand at 3443.015 kb on + strand at 3443.016 kb on + strand at 3443.023 kb on - strand at 3443.024 kb on - strand at 3443.125 kb on + strand, within Dsui_3208 at 3443.237 kb on + strand, within Dsui_3208 at 3443.315 kb on + strand, within Dsui_3208 at 3443.315 kb on + strand, within Dsui_3208 at 3443.323 kb on - strand, within Dsui_3208 at 3443.394 kb on - strand at 3443.424 kb on + strand, within Dsui_3208 at 3443.468 kb on + strand, within Dsui_3208 at 3443.486 kb on - strand at 3443.537 kb on + strand, within Dsui_3208 at 3443.658 kb on + strand, within Dsui_3208 at 3443.678 kb on - strand, within Dsui_3208
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 3,441,339 - Dsui_3205 0.39 -1.1 3,441,396 - Dsui_3205 0.48 -0.7 3,441,396 - Dsui_3205 0.48 -0.5 3,441,534 + -1.1 3,441,534 + Dsui_3205 0.69 -1.5 3,441,557 - Dsui_3205 0.73 -0.5 3,441,574 - Dsui_3205 0.75 -1.2 3,441,614 + +0.5 3,441,694 - -0.8 3,441,697 + -1.1 3,441,697 + -2.5 3,441,781 - +1.5 3,441,942 + Dsui_3206 0.30 -2.1 3,442,073 + Dsui_3206 0.62 +0.5 3,442,081 - Dsui_3206 0.64 -0.0 3,442,083 - Dsui_3206 0.64 -0.8 3,442,089 - Dsui_3206 0.65 -0.7 3,442,159 + -0.5 3,442,167 - Dsui_3206 0.84 -2.1 3,442,484 - Dsui_3207 0.50 -2.6 3,442,513 + -0.5 3,442,522 - Dsui_3207 0.58 -1.1 3,442,613 + +0.5 3,442,621 - Dsui_3207 0.77 -2.9 3,442,695 + -1.1 3,442,728 + -1.5 3,442,736 - -0.5 3,442,793 + -0.5 3,442,828 + -1.5 3,442,831 - -1.5 3,442,836 - -1.1 3,442,836 - -2.1 3,442,836 - +2.1 3,442,836 - +0.5 3,442,844 - -0.9 3,442,857 + -1.1 3,442,918 + -1.5 3,442,956 + -0.5 3,443,015 + -0.9 3,443,015 + -1.0 3,443,016 + -1.0 3,443,023 - +0.5 3,443,024 - +0.5 3,443,125 + Dsui_3208 0.13 -1.1 3,443,237 + Dsui_3208 0.25 -1.0 3,443,315 + Dsui_3208 0.34 -1.0 3,443,315 + Dsui_3208 0.34 -0.7 3,443,323 - Dsui_3208 0.35 -1.5 3,443,394 - +0.5 3,443,424 + Dsui_3208 0.45 -1.0 3,443,468 + Dsui_3208 0.50 -1.1 3,443,486 - -0.5 3,443,537 + Dsui_3208 0.57 -1.1 3,443,658 + Dsui_3208 0.70 -1.1 3,443,678 - Dsui_3208 0.73 -0.5
Or see this region's nucleotide sequence