Strain Fitness in Dechlorosoma suillum PS around Dsui_3207

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3205 and Dsui_3206 are separated by 80 nucleotidesDsui_3206 and Dsui_3207 overlap by 7 nucleotidesDsui_3207 and Dsui_3208 are separated by 262 nucleotides Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735 _3205 Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232 _3206 Dsui_3207: Dsui_3207 - ankyrin repeat-containing protein, at 3,442,226 to 3,442,738 _3207 Dsui_3208: Dsui_3208 - cysteine synthase A, at 3,443,001 to 3,443,933 _3208 Position (kb) 3442 3443Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3441.339 kb on - strand, within Dsui_3205at 3441.396 kb on - strand, within Dsui_3205at 3441.396 kb on - strand, within Dsui_3205at 3441.534 kb on + strandat 3441.534 kb on + strand, within Dsui_3205at 3441.557 kb on - strand, within Dsui_3205at 3441.574 kb on - strand, within Dsui_3205at 3441.614 kb on + strandat 3441.694 kb on - strandat 3441.697 kb on + strandat 3441.697 kb on + strandat 3441.781 kb on - strandat 3441.942 kb on + strand, within Dsui_3206at 3442.073 kb on + strand, within Dsui_3206at 3442.081 kb on - strand, within Dsui_3206at 3442.083 kb on - strand, within Dsui_3206at 3442.089 kb on - strand, within Dsui_3206at 3442.159 kb on + strandat 3442.167 kb on - strand, within Dsui_3206at 3442.484 kb on - strand, within Dsui_3207at 3442.513 kb on + strandat 3442.522 kb on - strand, within Dsui_3207at 3442.613 kb on + strandat 3442.621 kb on - strand, within Dsui_3207at 3442.695 kb on + strandat 3442.728 kb on + strandat 3442.736 kb on - strandat 3442.793 kb on + strandat 3442.828 kb on + strandat 3442.831 kb on - strandat 3442.836 kb on - strandat 3442.836 kb on - strandat 3442.836 kb on - strandat 3442.836 kb on - strandat 3442.844 kb on - strandat 3442.857 kb on + strandat 3442.918 kb on + strandat 3442.956 kb on + strandat 3443.015 kb on + strandat 3443.015 kb on + strandat 3443.016 kb on + strandat 3443.023 kb on - strandat 3443.024 kb on - strandat 3443.125 kb on + strand, within Dsui_3208at 3443.237 kb on + strand, within Dsui_3208at 3443.315 kb on + strand, within Dsui_3208at 3443.315 kb on + strand, within Dsui_3208at 3443.323 kb on - strand, within Dsui_3208at 3443.394 kb on - strandat 3443.424 kb on + strand, within Dsui_3208at 3443.468 kb on + strand, within Dsui_3208at 3443.486 kb on - strandat 3443.537 kb on + strand, within Dsui_3208at 3443.658 kb on + strand, within Dsui_3208at 3443.678 kb on - strand, within Dsui_3208

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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3,441,339 - Dsui_3205 0.39 -1.1
3,441,396 - Dsui_3205 0.48 -0.7
3,441,396 - Dsui_3205 0.48 -0.5
3,441,534 + -1.1
3,441,534 + Dsui_3205 0.69 -1.5
3,441,557 - Dsui_3205 0.73 -0.5
3,441,574 - Dsui_3205 0.75 -1.2
3,441,614 + +0.5
3,441,694 - -0.8
3,441,697 + -1.1
3,441,697 + -2.5
3,441,781 - +1.5
3,441,942 + Dsui_3206 0.30 -2.1
3,442,073 + Dsui_3206 0.62 +0.5
3,442,081 - Dsui_3206 0.64 -0.0
3,442,083 - Dsui_3206 0.64 -0.8
3,442,089 - Dsui_3206 0.65 -0.7
3,442,159 + -0.5
3,442,167 - Dsui_3206 0.84 -2.1
3,442,484 - Dsui_3207 0.50 -2.6
3,442,513 + -0.5
3,442,522 - Dsui_3207 0.58 -1.1
3,442,613 + +0.5
3,442,621 - Dsui_3207 0.77 -2.9
3,442,695 + -1.1
3,442,728 + -1.5
3,442,736 - -0.5
3,442,793 + -0.5
3,442,828 + -1.5
3,442,831 - -1.5
3,442,836 - -1.1
3,442,836 - -2.1
3,442,836 - +2.1
3,442,836 - +0.5
3,442,844 - -0.9
3,442,857 + -1.1
3,442,918 + -1.5
3,442,956 + -0.5
3,443,015 + -0.9
3,443,015 + -1.0
3,443,016 + -1.0
3,443,023 - +0.5
3,443,024 - +0.5
3,443,125 + Dsui_3208 0.13 -1.1
3,443,237 + Dsui_3208 0.25 -1.0
3,443,315 + Dsui_3208 0.34 -1.0
3,443,315 + Dsui_3208 0.34 -0.7
3,443,323 - Dsui_3208 0.35 -1.5
3,443,394 - +0.5
3,443,424 + Dsui_3208 0.45 -1.0
3,443,468 + Dsui_3208 0.50 -1.1
3,443,486 - -0.5
3,443,537 + Dsui_3208 0.57 -1.1
3,443,658 + Dsui_3208 0.70 -1.1
3,443,678 - Dsui_3208 0.73 -0.5

Or see this region's nucleotide sequence