Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3163 and Dsui_3164 are separated by 23 nucleotides Dsui_3164 and Dsui_3165 overlap by 14 nucleotides
Dsui_3163: Dsui_3163 - putative membrane protein, at 3,390,421 to 3,391,566
_3163
Dsui_3164: Dsui_3164 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,391,590 to 3,392,783
_3164
Dsui_3165: Dsui_3165 - tRNA(Ile)-lysidine synthetase, at 3,392,770 to 3,394,215
_3165
Position (kb)
3391
3392
3393 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3390.893 kb on + strand, within Dsui_3163 at 3390.893 kb on + strand, within Dsui_3163 at 3391.015 kb on - strand, within Dsui_3163 at 3391.021 kb on - strand, within Dsui_3163 at 3391.049 kb on + strand, within Dsui_3163 at 3391.062 kb on + strand, within Dsui_3163 at 3391.072 kb on + strand at 3391.188 kb on - strand, within Dsui_3163 at 3391.221 kb on - strand, within Dsui_3163 at 3391.278 kb on - strand, within Dsui_3163 at 3391.333 kb on + strand, within Dsui_3163 at 3391.371 kb on + strand, within Dsui_3163 at 3391.389 kb on + strand, within Dsui_3163 at 3391.421 kb on - strand, within Dsui_3163 at 3391.568 kb on - strand at 3391.643 kb on - strand at 3391.685 kb on + strand at 3391.911 kb on - strand, within Dsui_3164 at 3391.961 kb on + strand, within Dsui_3164 at 3392.018 kb on + strand, within Dsui_3164 at 3392.080 kb on + strand at 3392.152 kb on + strand at 3392.162 kb on + strand, within Dsui_3164 at 3392.372 kb on + strand at 3392.398 kb on - strand, within Dsui_3164 at 3392.398 kb on - strand, within Dsui_3164 at 3392.470 kb on - strand, within Dsui_3164 at 3392.515 kb on + strand at 3392.554 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.582 kb on - strand, within Dsui_3164 at 3392.722 kb on + strand at 3392.753 kb on + strand at 3392.768 kb on + strand at 3392.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 3,390,893 + Dsui_3163 0.41 -2.3 3,390,893 + Dsui_3163 0.41 -0.0 3,391,015 - Dsui_3163 0.52 -2.7 3,391,021 - Dsui_3163 0.52 -1.5 3,391,049 + Dsui_3163 0.55 +0.1 3,391,062 + Dsui_3163 0.56 -1.0 3,391,072 + +0.5 3,391,188 - Dsui_3163 0.67 -1.8 3,391,221 - Dsui_3163 0.70 -0.5 3,391,278 - Dsui_3163 0.75 -1.5 3,391,333 + Dsui_3163 0.80 -2.7 3,391,371 + Dsui_3163 0.83 +0.1 3,391,389 + Dsui_3163 0.84 -0.8 3,391,421 - Dsui_3163 0.87 -0.5 3,391,568 - -0.5 3,391,643 - -2.8 3,391,685 + +0.5 3,391,911 - Dsui_3164 0.27 +0.5 3,391,961 + Dsui_3164 0.31 +0.5 3,392,018 + Dsui_3164 0.36 -0.5 3,392,080 + +0.5 3,392,152 + +0.5 3,392,162 + Dsui_3164 0.48 -0.5 3,392,372 + +0.5 3,392,398 - Dsui_3164 0.68 -1.5 3,392,398 - Dsui_3164 0.68 -1.8 3,392,470 - Dsui_3164 0.74 +0.5 3,392,515 + -0.5 3,392,554 - Dsui_3164 0.81 -2.5 3,392,565 - Dsui_3164 0.82 -0.5 3,392,565 - Dsui_3164 0.82 -1.8 3,392,565 - Dsui_3164 0.82 +0.5 3,392,565 - Dsui_3164 0.82 +0.5 3,392,582 - Dsui_3164 0.83 -0.5 3,392,722 + -0.5 3,392,753 + -1.1 3,392,768 + +0.5 3,392,771 - +0.5
Or see this region's nucleotide sequence