Strain Fitness in Dechlorosoma suillum PS around Dsui_3162

Experiment: ALP with Nickel (II) chloride 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3161 and Dsui_3162 are separated by 311 nucleotidesDsui_3162 and Dsui_3163 overlap by 1 nucleotides Dsui_3161: Dsui_3161 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,386,064 to 3,387,986 _3161 Dsui_3162: Dsui_3162 - TonB-dependent siderophore receptor, at 3,388,298 to 3,390,421 _3162 Dsui_3163: Dsui_3163 - putative membrane protein, at 3,390,421 to 3,391,566 _3163 Position (kb) 3388 3389 3390 3391Strain fitness (log2 ratio) -3 -2 -1 0 1at 3387.302 kb on + strand, within Dsui_3161at 3387.605 kb on + strand, within Dsui_3161at 3387.673 kb on + strand, within Dsui_3161at 3387.719 kb on + strand, within Dsui_3161at 3387.918 kb on + strandat 3387.988 kb on - strandat 3388.269 kb on + strandat 3388.316 kb on - strandat 3388.345 kb on + strandat 3388.358 kb on - strandat 3388.382 kb on + strandat 3388.390 kb on - strandat 3388.402 kb on - strandat 3388.432 kb on - strandat 3388.432 kb on - strandat 3388.433 kb on - strandat 3388.553 kb on + strand, within Dsui_3162at 3388.627 kb on - strandat 3388.700 kb on + strand, within Dsui_3162at 3388.700 kb on + strand, within Dsui_3162at 3388.751 kb on - strand, within Dsui_3162at 3388.808 kb on + strand, within Dsui_3162at 3388.813 kb on + strand, within Dsui_3162at 3388.922 kb on - strand, within Dsui_3162at 3388.955 kb on + strand, within Dsui_3162at 3388.963 kb on - strand, within Dsui_3162at 3388.989 kb on + strand, within Dsui_3162at 3389.031 kb on + strand, within Dsui_3162at 3389.126 kb on - strand, within Dsui_3162at 3389.263 kb on - strandat 3389.329 kb on + strand, within Dsui_3162at 3389.341 kb on + strand, within Dsui_3162at 3389.490 kb on + strand, within Dsui_3162at 3389.503 kb on - strand, within Dsui_3162at 3389.533 kb on - strand, within Dsui_3162at 3389.633 kb on + strand, within Dsui_3162at 3389.681 kb on + strand, within Dsui_3162at 3389.745 kb on + strand, within Dsui_3162at 3389.763 kb on - strand, within Dsui_3162at 3389.765 kb on + strand, within Dsui_3162at 3389.785 kb on - strand, within Dsui_3162at 3389.895 kb on + strand, within Dsui_3162at 3389.934 kb on + strandat 3390.037 kb on - strand, within Dsui_3162at 3390.252 kb on - strandat 3390.273 kb on - strandat 3390.286 kb on + strandat 3390.301 kb on - strandat 3390.495 kb on - strandat 3390.570 kb on + strand, within Dsui_3163at 3390.893 kb on + strand, within Dsui_3163at 3390.893 kb on + strand, within Dsui_3163at 3391.015 kb on - strand, within Dsui_3163at 3391.021 kb on - strand, within Dsui_3163at 3391.049 kb on + strand, within Dsui_3163at 3391.062 kb on + strand, within Dsui_3163at 3391.072 kb on + strandat 3391.188 kb on - strand, within Dsui_3163at 3391.221 kb on - strand, within Dsui_3163at 3391.278 kb on - strand, within Dsui_3163at 3391.333 kb on + strand, within Dsui_3163at 3391.371 kb on + strand, within Dsui_3163at 3391.389 kb on + strand, within Dsui_3163at 3391.421 kb on - strand, within Dsui_3163

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
remove
3,387,302 + Dsui_3161 0.64 +0.5
3,387,605 + Dsui_3161 0.80 +0.5
3,387,673 + Dsui_3161 0.84 -1.5
3,387,719 + Dsui_3161 0.86 -0.5
3,387,918 + -3.2
3,387,988 - -2.1
3,388,269 + +1.5
3,388,316 - +0.5
3,388,345 + -0.8
3,388,358 - -1.1
3,388,382 + +0.5
3,388,390 - -0.5
3,388,402 - +0.5
3,388,432 - -0.5
3,388,432 - +0.5
3,388,433 - -1.1
3,388,553 + Dsui_3162 0.12 -0.3
3,388,627 - +0.5
3,388,700 + Dsui_3162 0.19 -1.3
3,388,700 + Dsui_3162 0.19 -1.6
3,388,751 - Dsui_3162 0.21 -0.5
3,388,808 + Dsui_3162 0.24 -2.0
3,388,813 + Dsui_3162 0.24 +0.5
3,388,922 - Dsui_3162 0.29 +0.5
3,388,955 + Dsui_3162 0.31 -0.6
3,388,963 - Dsui_3162 0.31 +0.5
3,388,989 + Dsui_3162 0.33 -1.0
3,389,031 + Dsui_3162 0.35 -1.5
3,389,126 - Dsui_3162 0.39 -0.5
3,389,263 - -0.5
3,389,329 + Dsui_3162 0.49 -1.1
3,389,341 + Dsui_3162 0.49 -0.2
3,389,490 + Dsui_3162 0.56 -2.1
3,389,503 - Dsui_3162 0.57 +0.5
3,389,533 - Dsui_3162 0.58 +0.5
3,389,633 + Dsui_3162 0.63 -1.5
3,389,681 + Dsui_3162 0.65 -1.3
3,389,745 + Dsui_3162 0.68 -0.5
3,389,763 - Dsui_3162 0.69 +0.5
3,389,765 + Dsui_3162 0.69 -1.3
3,389,785 - Dsui_3162 0.70 -0.5
3,389,895 + Dsui_3162 0.75 -1.0
3,389,934 + +0.5
3,390,037 - Dsui_3162 0.82 -0.5
3,390,252 - +0.5
3,390,273 - -1.1
3,390,286 + -1.0
3,390,301 - -0.5
3,390,495 - -3.3
3,390,570 + Dsui_3163 0.13 +0.5
3,390,893 + Dsui_3163 0.41 -2.3
3,390,893 + Dsui_3163 0.41 -0.0
3,391,015 - Dsui_3163 0.52 -2.7
3,391,021 - Dsui_3163 0.52 -1.5
3,391,049 + Dsui_3163 0.55 +0.1
3,391,062 + Dsui_3163 0.56 -1.0
3,391,072 + +0.5
3,391,188 - Dsui_3163 0.67 -1.8
3,391,221 - Dsui_3163 0.70 -0.5
3,391,278 - Dsui_3163 0.75 -1.5
3,391,333 + Dsui_3163 0.80 -2.7
3,391,371 + Dsui_3163 0.83 +0.1
3,391,389 + Dsui_3163 0.84 -0.8
3,391,421 - Dsui_3163 0.87 -0.5

Or see this region's nucleotide sequence