Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2915 and Dsui_2916 are separated by 172 nucleotides Dsui_2916 and Dsui_2917 overlap by 4 nucleotides Dsui_2917 and Dsui_2918 are separated by 32 nucleotides Dsui_2918 and Dsui_2919 are separated by 161 nucleotides Dsui_2919 and Dsui_2920 are separated by 47 nucleotides
Dsui_2915: Dsui_2915 - o-succinylbenzoic acid synthetase, at 3,117,563 to 3,118,627
_2915
Dsui_2916: Dsui_2916 - hypothetical protein, at 3,118,800 to 3,119,177
_2916
Dsui_2917: Dsui_2917 - hypothetical protein, at 3,119,174 to 3,119,572
_2917
Dsui_2918: Dsui_2918 - hypothetical protein, at 3,119,605 to 3,120,285
_2918
Dsui_2919: Dsui_2919 - addiction module antidote protein, HigA family, at 3,120,447 to 3,120,761
_2919
Dsui_2920: Dsui_2920 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,120,809 to 3,122,239
_2920
Position (kb)
3119
3120
3121 Strain fitness (log2 ratio)
-2
-1
0
1 at 3119.056 kb on + strand at 3119.192 kb on - strand at 3119.428 kb on - strand at 3119.428 kb on - strand at 3119.595 kb on - strand at 3119.595 kb on - strand at 3119.636 kb on + strand at 3119.700 kb on - strand at 3119.758 kb on - strand at 3119.987 kb on - strand at 3119.991 kb on + strand at 3120.110 kb on - strand at 3120.160 kb on - strand at 3120.367 kb on + strand at 3120.463 kb on + strand at 3120.465 kb on + strand at 3120.478 kb on + strand at 3120.486 kb on - strand at 3120.488 kb on + strand, within Dsui_2919 at 3120.488 kb on + strand at 3120.598 kb on + strand at 3120.598 kb on + strand, within Dsui_2919 at 3120.600 kb on + strand, within Dsui_2919 at 3120.702 kb on + strand, within Dsui_2919 at 3120.770 kb on + strand at 3120.850 kb on - strand at 3120.891 kb on + strand at 3120.891 kb on + strand at 3121.005 kb on + strand, within Dsui_2920 at 3121.024 kb on + strand, within Dsui_2920 at 3121.262 kb on - strand at 3121.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 3,119,056 + +0.7 3,119,192 - -0.3 3,119,428 - +0.7 3,119,428 - +0.7 3,119,595 - +0.7 3,119,595 - -1.6 3,119,636 + +0.7 3,119,700 - +0.7 3,119,758 - +0.7 3,119,987 - +0.7 3,119,991 + +0.7 3,120,110 - -0.3 3,120,160 - +0.7 3,120,367 + -0.3 3,120,463 + -2.1 3,120,465 + +0.7 3,120,478 + -0.3 3,120,486 - +0.7 3,120,488 + Dsui_2919 0.13 -0.3 3,120,488 + +0.7 3,120,598 + +0.7 3,120,598 + Dsui_2919 0.48 -0.3 3,120,600 + Dsui_2919 0.49 -0.3 3,120,702 + Dsui_2919 0.81 -2.1 3,120,770 + -2.1 3,120,850 - -1.3 3,120,891 + -2.3 3,120,891 + -2.4 3,121,005 + Dsui_2920 0.14 -2.3 3,121,024 + Dsui_2920 0.15 -1.5 3,121,262 - -0.3 3,121,267 - +0.7
Or see this region's nucleotide sequence