Strain Fitness in Dechlorosoma suillum PS around Dsui_2783

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2782 and Dsui_2783 are separated by 40 nucleotidesDsui_2783 and Dsui_2784 are separated by 871 nucleotides Dsui_2782: Dsui_2782 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 2,949,123 to 2,950,247 _2782 Dsui_2783: Dsui_2783 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,950,288 to 2,951,418 _2783 Dsui_2784: Dsui_2784 - hypothetical protein, at 2,952,290 to 2,952,892 _2784 Position (kb) 2950 2951 2952Strain fitness (log2 ratio) -3 -2 -1 0 1at 2949.342 kb on - strandat 2949.696 kb on + strand, within Dsui_2782at 2949.721 kb on + strand, within Dsui_2782at 2949.778 kb on - strand, within Dsui_2782at 2950.142 kb on - strandat 2950.214 kb on - strandat 2950.403 kb on + strandat 2950.480 kb on - strand, within Dsui_2783at 2950.501 kb on - strand, within Dsui_2783at 2950.676 kb on + strandat 2951.153 kb on - strandat 2951.153 kb on - strand, within Dsui_2783at 2951.156 kb on - strand, within Dsui_2783at 2951.201 kb on - strand, within Dsui_2783at 2951.280 kb on + strand, within Dsui_2783at 2951.392 kb on + strandat 2951.392 kb on + strandat 2951.392 kb on + strandat 2951.392 kb on + strandat 2951.400 kb on - strandat 2951.415 kb on + strandat 2951.457 kb on - strandat 2951.526 kb on - strandat 2951.584 kb on + strandat 2951.646 kb on - strandat 2951.721 kb on + strandat 2951.736 kb on + strandat 2951.744 kb on - strandat 2951.793 kb on - strandat 2951.916 kb on - strandat 2952.003 kb on - strandat 2952.107 kb on - strandat 2952.174 kb on - strandat 2952.188 kb on - strandat 2952.249 kb on - strandat 2952.277 kb on - strandat 2952.356 kb on - strand, within Dsui_2784at 2952.356 kb on - strand, within Dsui_2784at 2952.357 kb on - strand, within Dsui_2784at 2952.367 kb on - strand, within Dsui_2784at 2952.367 kb on - strand, within Dsui_2784at 2952.367 kb on - strandat 2952.383 kb on + strand, within Dsui_2784at 2952.389 kb on - strandat 2952.406 kb on + strand, within Dsui_2784at 2952.406 kb on + strand, within Dsui_2784at 2952.414 kb on - strand, within Dsui_2784

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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2,949,342 - -0.3
2,949,696 + Dsui_2782 0.51 +0.7
2,949,721 + Dsui_2782 0.53 -0.3
2,949,778 - Dsui_2782 0.58 -0.9
2,950,142 - -0.9
2,950,214 - -1.3
2,950,403 + +0.7
2,950,480 - Dsui_2783 0.17 -0.3
2,950,501 - Dsui_2783 0.19 -0.3
2,950,676 + +0.7
2,951,153 - +0.7
2,951,153 - Dsui_2783 0.76 -0.9
2,951,156 - Dsui_2783 0.77 +0.7
2,951,201 - Dsui_2783 0.81 -0.9
2,951,280 + Dsui_2783 0.88 -2.1
2,951,392 + -1.6
2,951,392 + +0.7
2,951,392 + -3.1
2,951,392 + -2.1
2,951,400 - -2.9
2,951,415 + -0.9
2,951,457 - +0.7
2,951,526 - +0.7
2,951,584 + -0.3
2,951,646 - -0.9
2,951,721 + -0.9
2,951,736 + -0.3
2,951,744 - +0.7
2,951,793 - +0.7
2,951,916 - -0.3
2,952,003 - -1.6
2,952,107 - +0.7
2,952,174 - +0.7
2,952,188 - -1.3
2,952,249 - +0.7
2,952,277 - +0.7
2,952,356 - Dsui_2784 0.11 +0.7
2,952,356 - Dsui_2784 0.11 +0.7
2,952,357 - Dsui_2784 0.11 -0.3
2,952,367 - Dsui_2784 0.13 +0.7
2,952,367 - Dsui_2784 0.13 +0.7
2,952,367 - +0.7
2,952,383 + Dsui_2784 0.15 -0.8
2,952,389 - +0.7
2,952,406 + Dsui_2784 0.19 -0.3
2,952,406 + Dsui_2784 0.19 +0.7
2,952,414 - Dsui_2784 0.21 -1.6

Or see this region's nucleotide sequence