Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2537 and Dsui_2538 are separated by 108 nucleotides Dsui_2538 and Dsui_2539 are separated by 153 nucleotides Dsui_2539 and Dsui_2540 are separated by 24 nucleotides
Dsui_2537: Dsui_2537 - poly(R)-hydroxyalkanoic acid synthase, class I, at 2,688,226 to 2,689,965
_2537
Dsui_2538: Dsui_2538 - acetoacetyl-CoA reductase, at 2,690,074 to 2,690,814
_2538
Dsui_2539: Dsui_2539 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,690,968 to 2,691,531
_2539
Dsui_2540: Dsui_2540 - ribosomal protein S12 methylthiotransferase RimO, at 2,691,556 to 2,692,899
_2540
Position (kb)
2690
2691 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2690.063 kb on - strand at 2690.134 kb on + strand at 2690.139 kb on + strand at 2690.281 kb on + strand, within Dsui_2538 at 2690.288 kb on - strand, within Dsui_2538 at 2690.288 kb on - strand at 2690.373 kb on + strand, within Dsui_2538 at 2690.380 kb on + strand, within Dsui_2538 at 2690.388 kb on - strand, within Dsui_2538 at 2690.388 kb on - strand, within Dsui_2538 at 2690.397 kb on + strand, within Dsui_2538 at 2690.508 kb on + strand, within Dsui_2538 at 2690.576 kb on - strand at 2690.640 kb on + strand, within Dsui_2538 at 2690.667 kb on + strand, within Dsui_2538 at 2690.675 kb on - strand, within Dsui_2538 at 2690.711 kb on + strand, within Dsui_2538 at 2690.737 kb on + strand, within Dsui_2538 at 2690.742 kb on - strand at 2690.747 kb on + strand at 2690.747 kb on + strand at 2690.811 kb on - strand at 2690.821 kb on + strand at 2690.964 kb on + strand at 2690.994 kb on + strand at 2691.046 kb on - strand, within Dsui_2539 at 2691.280 kb on + strand, within Dsui_2539 at 2691.344 kb on + strand, within Dsui_2539 at 2691.462 kb on - strand, within Dsui_2539 at 2691.550 kb on + strand at 2691.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 2,690,063 - +0.5 2,690,134 + -1.7 2,690,139 + -0.7 2,690,281 + Dsui_2538 0.28 -0.3 2,690,288 - Dsui_2538 0.29 +0.5 2,690,288 - +0.5 2,690,373 + Dsui_2538 0.40 -1.0 2,690,380 + Dsui_2538 0.41 -1.0 2,690,388 - Dsui_2538 0.42 -0.5 2,690,388 - Dsui_2538 0.42 +0.5 2,690,397 + Dsui_2538 0.44 -1.0 2,690,508 + Dsui_2538 0.59 -1.4 2,690,576 - +0.5 2,690,640 + Dsui_2538 0.76 -0.9 2,690,667 + Dsui_2538 0.80 -1.0 2,690,675 - Dsui_2538 0.81 -1.5 2,690,711 + Dsui_2538 0.86 -1.0 2,690,737 + Dsui_2538 0.89 -0.3 2,690,742 - -0.5 2,690,747 + -0.8 2,690,747 + -1.2 2,690,811 - +0.5 2,690,821 + -0.6 2,690,964 + -0.2 2,690,994 + -0.2 2,691,046 - Dsui_2539 0.14 -1.1 2,691,280 + Dsui_2539 0.55 -0.6 2,691,344 + Dsui_2539 0.67 -3.2 2,691,462 - Dsui_2539 0.88 -1.9 2,691,550 + -0.8 2,691,579 + -1.0
Or see this region's nucleotide sequence