Strain Fitness in Dechlorosoma suillum PS around Dsui_2520

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2519 and Dsui_2520 are separated by 700 nucleotidesDsui_2520 and Dsui_2521 are separated by 76 nucleotides Dsui_2519: Dsui_2519 - methyl-accepting chemotaxis protein, at 2,669,565 to 2,671,214 _2519 Dsui_2520: Dsui_2520 - flagellar basal-body rod protein FlgF, at 2,671,915 to 2,672,661 _2520 Dsui_2521: Dsui_2521 - cysteine synthase A, at 2,672,738 to 2,673,724 _2521 Position (kb) 2671 2672 2673Strain fitness (log2 ratio) -3 -2 -1 0 1at 2671.242 kb on - strandat 2671.242 kb on - strandat 2671.267 kb on + strandat 2671.353 kb on + strandat 2671.353 kb on + strandat 2671.361 kb on - strandat 2671.387 kb on - strandat 2671.387 kb on - strandat 2671.387 kb on - strandat 2671.475 kb on + strandat 2671.480 kb on + strandat 2671.518 kb on - strandat 2671.523 kb on - strandat 2671.551 kb on - strandat 2671.551 kb on - strandat 2671.558 kb on - strandat 2671.621 kb on - strandat 2671.621 kb on - strandat 2671.926 kb on + strandat 2671.986 kb on + strandat 2671.989 kb on - strandat 2672.054 kb on + strand, within Dsui_2520at 2672.094 kb on - strand, within Dsui_2520at 2672.127 kb on + strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.133 kb on - strandat 2672.133 kb on - strandat 2672.152 kb on - strand, within Dsui_2520at 2672.172 kb on - strand, within Dsui_2520at 2672.172 kb on - strand, within Dsui_2520at 2672.224 kb on + strand, within Dsui_2520at 2672.392 kb on + strand, within Dsui_2520at 2672.422 kb on - strand, within Dsui_2520at 2672.492 kb on + strand, within Dsui_2520at 2672.534 kb on + strand, within Dsui_2520at 2672.595 kb on + strandat 2672.656 kb on + strandat 2672.656 kb on + strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.674 kb on - strandat 2672.690 kb on + strandat 2672.735 kb on + strandat 2672.739 kb on - strandat 2672.743 kb on + strandat 2672.743 kb on + strandat 2672.743 kb on + strandat 2672.751 kb on - strandat 2672.784 kb on + strandat 2672.803 kb on + strandat 2672.825 kb on + strandat 2672.889 kb on - strand, within Dsui_2521at 2672.902 kb on + strand, within Dsui_2521at 2672.902 kb on + strand, within Dsui_2521at 2672.988 kb on + strand, within Dsui_2521at 2673.010 kb on - strand, within Dsui_2521at 2673.033 kb on - strand, within Dsui_2521at 2673.086 kb on - strand, within Dsui_2521at 2673.102 kb on - strand, within Dsui_2521at 2673.123 kb on - strand, within Dsui_2521at 2673.165 kb on + strand, within Dsui_2521at 2673.166 kb on + strand, within Dsui_2521at 2673.209 kb on - strand, within Dsui_2521at 2673.260 kb on + strand, within Dsui_2521at 2673.268 kb on - strand, within Dsui_2521at 2673.268 kb on - strand, within Dsui_2521at 2673.375 kb on + strand, within Dsui_2521at 2673.431 kb on + strandat 2673.444 kb on - strand, within Dsui_2521at 2673.473 kb on - strand, within Dsui_2521at 2673.489 kb on + strand, within Dsui_2521at 2673.499 kb on + strand, within Dsui_2521

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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2,671,242 - -1.8
2,671,242 - +0.5
2,671,267 + +0.5
2,671,353 + -1.1
2,671,353 + +0.5
2,671,361 - +0.5
2,671,387 - -0.5
2,671,387 - +0.5
2,671,387 - -1.1
2,671,475 + +0.5
2,671,480 + +0.5
2,671,518 - +0.5
2,671,523 - -2.1
2,671,551 - -0.5
2,671,551 - +0.5
2,671,558 - -1.8
2,671,621 - -1.8
2,671,621 - -0.5
2,671,926 + -2.3
2,671,986 + -1.1
2,671,989 - -1.1
2,672,054 + Dsui_2520 0.19 -0.5
2,672,094 - Dsui_2520 0.24 -1.1
2,672,127 + Dsui_2520 0.28 -0.5
2,672,131 - Dsui_2520 0.29 -2.3
2,672,131 - Dsui_2520 0.29 -1.5
2,672,131 - Dsui_2520 0.29 +0.5
2,672,131 - Dsui_2520 0.29 +0.5
2,672,131 - Dsui_2520 0.29 -0.5
2,672,131 - Dsui_2520 0.29 -2.5
2,672,133 - +0.5
2,672,133 - +0.5
2,672,152 - Dsui_2520 0.32 -2.5
2,672,172 - Dsui_2520 0.34 -1.1
2,672,172 - Dsui_2520 0.34 +0.5
2,672,224 + Dsui_2520 0.41 -1.1
2,672,392 + Dsui_2520 0.64 -0.5
2,672,422 - Dsui_2520 0.68 +0.5
2,672,492 + Dsui_2520 0.77 -1.1
2,672,534 + Dsui_2520 0.83 +0.5
2,672,595 + +0.5
2,672,656 + +0.5
2,672,656 + +0.5
2,672,664 - +0.5
2,672,664 - -1.5
2,672,664 - -2.8
2,672,664 - +0.5
2,672,664 - -2.5
2,672,674 - -1.4
2,672,690 + +0.5
2,672,735 + -1.8
2,672,739 - -2.1
2,672,743 + +0.5
2,672,743 + +0.5
2,672,743 + -1.5
2,672,751 - -0.9
2,672,784 + +0.5
2,672,803 + -1.1
2,672,825 + -0.5
2,672,889 - Dsui_2521 0.15 -2.1
2,672,902 + Dsui_2521 0.17 +0.5
2,672,902 + Dsui_2521 0.17 +0.5
2,672,988 + Dsui_2521 0.25 -1.8
2,673,010 - Dsui_2521 0.28 -0.1
2,673,033 - Dsui_2521 0.30 -1.5
2,673,086 - Dsui_2521 0.35 -1.7
2,673,102 - Dsui_2521 0.37 +0.1
2,673,123 - Dsui_2521 0.39 -0.9
2,673,165 + Dsui_2521 0.43 -1.1
2,673,166 + Dsui_2521 0.43 -1.1
2,673,209 - Dsui_2521 0.48 -1.4
2,673,260 + Dsui_2521 0.53 -1.5
2,673,268 - Dsui_2521 0.54 -0.1
2,673,268 - Dsui_2521 0.54 -1.0
2,673,375 + Dsui_2521 0.65 -1.1
2,673,431 + +0.5
2,673,444 - Dsui_2521 0.72 -0.7
2,673,473 - Dsui_2521 0.74 -0.7
2,673,489 + Dsui_2521 0.76 +0.5
2,673,499 + Dsui_2521 0.77 -0.5

Or see this region's nucleotide sequence