Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2285 and Dsui_2286 are separated by 26 nucleotides Dsui_2286 and Dsui_2287 are separated by 157 nucleotides Dsui_2287 and Dsui_2288 are separated by 112 nucleotides Dsui_2288 and Dsui_2289 are separated by 14 nucleotides
Dsui_2285: Dsui_2285 - hypothetical protein, at 2,438,199 to 2,439,014
_2285
Dsui_2286: Dsui_2286 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,439,041 to 2,439,835
_2286
Dsui_2287: Dsui_2287 - aminopeptidase N, at 2,439,993 to 2,442,602
_2287
Dsui_2288: Dsui_2288 - hypothetical protein, at 2,442,715 to 2,443,389
_2288
Dsui_2289: Dsui_2289 - qaraquat-inducible protein B, at 2,443,404 to 2,444,975
_2289
Position (kb)
2439
2440
2441
2442
2443 Strain fitness (log2 ratio)
-2
-1
0
1 at 2439.087 kb on - strand at 2439.181 kb on - strand, within Dsui_2286 at 2439.197 kb on - strand, within Dsui_2286 at 2439.212 kb on - strand, within Dsui_2286 at 2439.388 kb on + strand at 2439.483 kb on - strand at 2439.542 kb on + strand at 2439.595 kb on + strand, within Dsui_2286 at 2439.837 kb on - strand at 2439.924 kb on + strand at 2439.924 kb on + strand at 2440.015 kb on + strand at 2440.028 kb on + strand at 2440.037 kb on - strand at 2440.068 kb on - strand at 2440.110 kb on + strand at 2440.233 kb on + strand at 2440.255 kb on + strand, within Dsui_2287 at 2440.255 kb on + strand, within Dsui_2287 at 2440.263 kb on - strand, within Dsui_2287 at 2440.354 kb on + strand, within Dsui_2287 at 2440.432 kb on + strand, within Dsui_2287 at 2440.481 kb on + strand, within Dsui_2287 at 2440.515 kb on - strand, within Dsui_2287 at 2440.534 kb on + strand, within Dsui_2287 at 2440.614 kb on - strand, within Dsui_2287 at 2440.838 kb on + strand, within Dsui_2287 at 2440.843 kb on + strand, within Dsui_2287 at 2440.851 kb on - strand at 2440.945 kb on + strand, within Dsui_2287 at 2440.977 kb on - strand, within Dsui_2287 at 2441.004 kb on + strand, within Dsui_2287 at 2441.056 kb on - strand, within Dsui_2287 at 2441.129 kb on + strand at 2441.137 kb on + strand, within Dsui_2287 at 2441.137 kb on - strand at 2441.169 kb on - strand, within Dsui_2287 at 2441.245 kb on + strand, within Dsui_2287 at 2441.250 kb on + strand, within Dsui_2287 at 2441.351 kb on - strand, within Dsui_2287 at 2441.356 kb on - strand, within Dsui_2287 at 2441.392 kb on - strand, within Dsui_2287 at 2441.406 kb on - strand, within Dsui_2287 at 2441.414 kb on + strand, within Dsui_2287 at 2441.421 kb on + strand at 2441.830 kb on + strand, within Dsui_2287 at 2441.830 kb on + strand, within Dsui_2287 at 2441.883 kb on - strand at 2441.927 kb on + strand at 2441.930 kb on - strand at 2442.001 kb on - strand at 2442.087 kb on - strand at 2442.141 kb on + strand, within Dsui_2287 at 2442.191 kb on - strand at 2442.201 kb on - strand at 2442.274 kb on - strand at 2442.422 kb on + strand at 2442.422 kb on + strand at 2442.422 kb on + strand at 2442.453 kb on - strand at 2442.468 kb on + strand at 2442.513 kb on + strand at 2442.521 kb on - strand at 2442.528 kb on + strand at 2442.558 kb on - strand at 2442.911 kb on + strand at 2442.978 kb on + strand, within Dsui_2288 at 2443.131 kb on + strand at 2443.179 kb on + strand, within Dsui_2288 at 2443.408 kb on - strand at 2443.568 kb on - strand, within Dsui_2289 at 2443.596 kb on - strand, within Dsui_2289
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 2,439,087 - +0.8 2,439,181 - Dsui_2286 0.18 -0.2 2,439,197 - Dsui_2286 0.20 +0.8 2,439,212 - Dsui_2286 0.22 -0.2 2,439,388 + +0.8 2,439,483 - +0.8 2,439,542 + +0.8 2,439,595 + Dsui_2286 0.70 -0.8 2,439,837 - +0.8 2,439,924 + -1.5 2,439,924 + -0.8 2,440,015 + +0.8 2,440,028 + -1.5 2,440,037 - +0.8 2,440,068 - +0.8 2,440,110 + -1.2 2,440,233 + +0.0 2,440,255 + Dsui_2287 0.10 -0.8 2,440,255 + Dsui_2287 0.10 -1.8 2,440,263 - Dsui_2287 0.10 -0.2 2,440,354 + Dsui_2287 0.14 -2.0 2,440,432 + Dsui_2287 0.17 +0.8 2,440,481 + Dsui_2287 0.19 +0.8 2,440,515 - Dsui_2287 0.20 +0.8 2,440,534 + Dsui_2287 0.21 -0.2 2,440,614 - Dsui_2287 0.24 -0.2 2,440,838 + Dsui_2287 0.32 -0.8 2,440,843 + Dsui_2287 0.33 -1.8 2,440,851 - +0.8 2,440,945 + Dsui_2287 0.36 +0.8 2,440,977 - Dsui_2287 0.38 -0.2 2,441,004 + Dsui_2287 0.39 -0.2 2,441,056 - Dsui_2287 0.41 -0.4 2,441,129 + +0.8 2,441,137 + Dsui_2287 0.44 +0.8 2,441,137 - +0.8 2,441,169 - Dsui_2287 0.45 +0.8 2,441,245 + Dsui_2287 0.48 -0.8 2,441,250 + Dsui_2287 0.48 -2.4 2,441,351 - Dsui_2287 0.52 +0.8 2,441,356 - Dsui_2287 0.52 -1.2 2,441,392 - Dsui_2287 0.54 +0.8 2,441,406 - Dsui_2287 0.54 -0.8 2,441,414 + Dsui_2287 0.54 -0.2 2,441,421 + +0.8 2,441,830 + Dsui_2287 0.70 -0.4 2,441,830 + Dsui_2287 0.70 -0.7 2,441,883 - -0.2 2,441,927 + +0.8 2,441,930 - +0.8 2,442,001 - -0.2 2,442,087 - +0.8 2,442,141 + Dsui_2287 0.82 +0.8 2,442,191 - +0.8 2,442,201 - -0.2 2,442,274 - +0.8 2,442,422 + -0.2 2,442,422 + +0.8 2,442,422 + -2.2 2,442,453 - -0.2 2,442,468 + -0.2 2,442,513 + -1.7 2,442,521 - +0.8 2,442,528 + -1.7 2,442,558 - -0.8 2,442,911 + -0.2 2,442,978 + Dsui_2288 0.39 -0.2 2,443,131 + +0.8 2,443,179 + Dsui_2288 0.69 -0.8 2,443,408 - +0.8 2,443,568 - Dsui_2289 0.10 -1.8 2,443,596 - Dsui_2289 0.12 +0.8
Or see this region's nucleotide sequence