Strain Fitness in Dechlorosoma suillum PS around Dsui_2042

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2040 and Dsui_2041 are separated by 60 nucleotidesDsui_2041 and Dsui_2042 are separated by 20 nucleotidesDsui_2042 and Dsui_2043 are separated by 173 nucleotides Dsui_2040: Dsui_2040 - putative CoA-binding protein, at 2,159,442 to 2,159,900 _2040 Dsui_2041: Dsui_2041 - enoyl-CoA hydratase/carnithine racemase, at 2,159,961 to 2,160,746 _2041 Dsui_2042: Dsui_2042 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,160,767 to 2,161,945 _2042 Dsui_2043: Dsui_2043 - cysteine synthase, at 2,162,119 to 2,163,624 _2043 Position (kb) 2160 2161 2162Strain fitness (log2 ratio) -1 0 1at 2159.854 kb on - strand, within Dsui_2040at 2159.872 kb on + strandat 2159.876 kb on + strandat 2159.880 kb on - strandat 2159.945 kb on + strandat 2159.951 kb on - strandat 2159.978 kb on - strandat 2160.064 kb on + strand, within Dsui_2041at 2160.110 kb on - strand, within Dsui_2041at 2160.117 kb on - strand, within Dsui_2041at 2160.119 kb on + strandat 2160.220 kb on - strand, within Dsui_2041at 2160.246 kb on - strand, within Dsui_2041at 2160.261 kb on + strandat 2160.269 kb on - strand, within Dsui_2041at 2160.277 kb on - strandat 2160.324 kb on - strand, within Dsui_2041at 2160.324 kb on - strandat 2160.460 kb on + strandat 2160.470 kb on + strandat 2160.506 kb on - strand, within Dsui_2041at 2160.592 kb on - strandat 2160.625 kb on + strand, within Dsui_2041at 2160.696 kb on - strandat 2160.765 kb on - strandat 2160.789 kb on - strandat 2160.789 kb on - strandat 2160.792 kb on + strandat 2160.792 kb on + strandat 2160.868 kb on + strandat 2160.876 kb on - strandat 2160.876 kb on - strandat 2160.996 kb on + strandat 2161.004 kb on - strandat 2161.041 kb on + strandat 2161.080 kb on + strandat 2161.173 kb on - strand, within Dsui_2042at 2161.211 kb on + strand, within Dsui_2042at 2161.305 kb on - strand, within Dsui_2042at 2161.401 kb on + strandat 2161.565 kb on - strand, within Dsui_2042at 2161.610 kb on + strand, within Dsui_2042at 2161.610 kb on + strandat 2161.636 kb on - strand, within Dsui_2042at 2161.674 kb on - strandat 2161.705 kb on - strand, within Dsui_2042at 2161.771 kb on + strand, within Dsui_2042at 2161.798 kb on - strand, within Dsui_2042at 2161.881 kb on + strandat 2161.941 kb on + strandat 2161.941 kb on + strandat 2161.976 kb on + strandat 2161.994 kb on + strandat 2162.250 kb on - strandat 2162.782 kb on - strand, within Dsui_2043at 2162.862 kb on + strand, within Dsui_2043

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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2,159,854 - Dsui_2040 0.90 -0.4
2,159,872 + -0.1
2,159,876 + +0.9
2,159,880 - -0.8
2,159,945 + -0.1
2,159,951 - -0.5
2,159,978 - -0.6
2,160,064 + Dsui_2041 0.13 -1.1
2,160,110 - Dsui_2041 0.19 +0.1
2,160,117 - Dsui_2041 0.20 -0.4
2,160,119 + +0.9
2,160,220 - Dsui_2041 0.33 +0.9
2,160,246 - Dsui_2041 0.36 -0.1
2,160,261 + +0.9
2,160,269 - Dsui_2041 0.39 +0.9
2,160,277 - -0.1
2,160,324 - Dsui_2041 0.46 +0.9
2,160,324 - +0.9
2,160,460 + -0.1
2,160,470 + +0.9
2,160,506 - Dsui_2041 0.69 +0.9
2,160,592 - +0.9
2,160,625 + Dsui_2041 0.84 -1.1
2,160,696 - +0.9
2,160,765 - -1.1
2,160,789 - +0.9
2,160,789 - -0.1
2,160,792 + +0.9
2,160,792 + -1.4
2,160,868 + -0.1
2,160,876 - +0.9
2,160,876 - +0.9
2,160,996 + +0.9
2,161,004 - +0.9
2,161,041 + +0.9
2,161,080 + +0.9
2,161,173 - Dsui_2042 0.34 -1.4
2,161,211 + Dsui_2042 0.38 -0.7
2,161,305 - Dsui_2042 0.46 -1.1
2,161,401 + +0.9
2,161,565 - Dsui_2042 0.68 -0.7
2,161,610 + Dsui_2042 0.72 -0.1
2,161,610 + -0.7
2,161,636 - Dsui_2042 0.74 -0.1
2,161,674 - +0.9
2,161,705 - Dsui_2042 0.80 +0.9
2,161,771 + Dsui_2042 0.85 +0.9
2,161,798 - Dsui_2042 0.87 +0.9
2,161,881 + +0.9
2,161,941 + +0.9
2,161,941 + +0.9
2,161,976 + -1.1
2,161,994 + +0.9
2,162,250 - +0.9
2,162,782 - Dsui_2043 0.44 +0.9
2,162,862 + Dsui_2043 0.49 +0.9

Or see this region's nucleotide sequence