Strain Fitness in Dechlorosoma suillum PS around Dsui_1668

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1667 and Dsui_1668 are separated by 249 nucleotidesDsui_1668 and Dsui_1669 are separated by 102 nucleotides Dsui_1667: Dsui_1667 - TonB-dependent siderophore receptor, at 1,750,292 to 1,752,595 _1667 Dsui_1668: Dsui_1668 - alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase, at 1,752,845 to 1,753,969 _1668 Dsui_1669: Dsui_1669 - trypsin-like serine protease with C-terminal PDZ domain, at 1,754,072 to 1,755,490 _1669 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -3 -2 -1 0 1at 1752.554 kb on - strandat 1752.901 kb on + strandat 1752.909 kb on - strandat 1752.929 kb on - strandat 1752.960 kb on - strand, within Dsui_1668at 1752.960 kb on - strand, within Dsui_1668at 1753.143 kb on - strand, within Dsui_1668at 1753.309 kb on - strandat 1753.762 kb on - strand, within Dsui_1668at 1753.874 kb on - strandat 1754.117 kb on - strandat 1754.232 kb on - strandat 1754.345 kb on - strandat 1754.365 kb on + strandat 1754.391 kb on - strand, within Dsui_1669at 1754.718 kb on + strandat 1754.872 kb on - strand, within Dsui_1669at 1754.969 kb on + strand, within Dsui_1669

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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1,752,554 - -3.1
1,752,901 + +0.7
1,752,909 - +0.7
1,752,929 - -1.3
1,752,960 - Dsui_1668 0.10 -0.3
1,752,960 - Dsui_1668 0.10 -1.7
1,753,143 - Dsui_1668 0.26 -1.3
1,753,309 - -0.3
1,753,762 - Dsui_1668 0.82 -2.8
1,753,874 - -0.9
1,754,117 - -1.3
1,754,232 - +0.7
1,754,345 - +0.7
1,754,365 + +0.7
1,754,391 - Dsui_1669 0.22 -0.3
1,754,718 + +0.7
1,754,872 - Dsui_1669 0.56 -1.9
1,754,969 + Dsui_1669 0.63 -0.3

Or see this region's nucleotide sequence