Strain Fitness in Dechlorosoma suillum PS around Dsui_1667

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1665 and Dsui_1666 overlap by 16 nucleotidesDsui_1666 and Dsui_1667 are separated by 79 nucleotidesDsui_1667 and Dsui_1668 are separated by 249 nucleotides Dsui_1665: Dsui_1665 - hypothetical protein, at 1,748,888 to 1,749,547 _1665 Dsui_1666: Dsui_1666 - putative iron-regulated protein, at 1,749,532 to 1,750,212 _1666 Dsui_1667: Dsui_1667 - TonB-dependent siderophore receptor, at 1,750,292 to 1,752,595 _1667 Dsui_1668: Dsui_1668 - alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase, at 1,752,845 to 1,753,969 _1668 Position (kb) 1750 1751 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1at 1749.358 kb on - strand, within Dsui_1665at 1749.513 kb on + strandat 1749.530 kb on + strandat 1749.538 kb on - strandat 1749.538 kb on - strandat 1750.221 kb on + strandat 1750.235 kb on + strandat 1752.554 kb on - strandat 1752.901 kb on + strandat 1752.909 kb on - strandat 1752.929 kb on - strandat 1752.960 kb on - strand, within Dsui_1668at 1752.960 kb on - strand, within Dsui_1668at 1753.143 kb on - strand, within Dsui_1668at 1753.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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1,749,358 - Dsui_1665 0.71 -0.7
1,749,513 + +0.7
1,749,530 + -0.9
1,749,538 - -1.2
1,749,538 - -0.4
1,750,221 + +0.7
1,750,235 + -0.9
1,752,554 - -3.1
1,752,901 + +0.7
1,752,909 - +0.7
1,752,929 - -1.3
1,752,960 - Dsui_1668 0.10 -0.3
1,752,960 - Dsui_1668 0.10 -1.7
1,753,143 - Dsui_1668 0.26 -1.3
1,753,309 - -0.3

Or see this region's nucleotide sequence