Strain Fitness in Dechlorosoma suillum PS around Dsui_1552

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1551 and Dsui_1552 are separated by 67 nucleotidesDsui_1552 and Dsui_1553 are separated by 1 nucleotidesDsui_1553 and Dsui_1554 are separated by 61 nucleotides Dsui_1551: Dsui_1551 - DNA mismatch repair protein MutL, at 1,613,388 to 1,615,244 _1551 Dsui_1552: Dsui_1552 - tRNA isopentenyltransferase MiaA, at 1,615,312 to 1,616,259 _1552 Dsui_1553: Dsui_1553 - regulator of competence-specific genes, at 1,616,261 to 1,616,635 _1553 Dsui_1554: Dsui_1554 - PAS domain S-box, at 1,616,697 to 1,619,519 _1554 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -2 -1 0 1at 1614.341 kb on + strand, within Dsui_1551at 1614.353 kb on + strand, within Dsui_1551at 1614.361 kb on - strand, within Dsui_1551at 1614.405 kb on - strandat 1614.517 kb on + strand, within Dsui_1551at 1614.743 kb on + strand, within Dsui_1551at 1614.797 kb on - strand, within Dsui_1551at 1614.968 kb on - strand, within Dsui_1551at 1614.978 kb on + strand, within Dsui_1551at 1614.987 kb on - strand, within Dsui_1551at 1615.019 kb on + strand, within Dsui_1551at 1615.059 kb on + strandat 1615.202 kb on + strandat 1615.262 kb on + strandat 1615.601 kb on + strand, within Dsui_1552at 1616.279 kb on - strandat 1616.317 kb on - strand, within Dsui_1553at 1616.442 kb on + strand, within Dsui_1553at 1616.466 kb on + strand, within Dsui_1553at 1616.576 kb on - strandat 1616.935 kb on - strandat 1617.172 kb on + strand, within Dsui_1554at 1617.248 kb on + strand, within Dsui_1554at 1617.257 kb on - strand, within Dsui_1554

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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1,614,341 + Dsui_1551 0.51 -1.6
1,614,353 + Dsui_1551 0.52 -1.4
1,614,361 - Dsui_1551 0.52 -1.3
1,614,405 - -0.9
1,614,517 + Dsui_1551 0.61 -1.3
1,614,743 + Dsui_1551 0.73 -1.1
1,614,797 - Dsui_1551 0.76 +0.7
1,614,968 - Dsui_1551 0.85 +0.7
1,614,978 + Dsui_1551 0.86 -0.7
1,614,987 - Dsui_1551 0.86 -0.9
1,615,019 + Dsui_1551 0.88 -1.1
1,615,059 + -1.9
1,615,202 + -1.6
1,615,262 + -1.1
1,615,601 + Dsui_1552 0.30 +0.7
1,616,279 - +0.7
1,616,317 - Dsui_1553 0.15 -1.9
1,616,442 + Dsui_1553 0.48 -2.1
1,616,466 + Dsui_1553 0.55 -1.6
1,616,576 - -0.3
1,616,935 - +0.7
1,617,172 + Dsui_1554 0.17 -1.2
1,617,248 + Dsui_1554 0.20 +0.7
1,617,257 - Dsui_1554 0.20 +0.7

Or see this region's nucleotide sequence