Strain Fitness in Dechlorosoma suillum PS around Dsui_1402

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1400 and Dsui_1401 are separated by 83 nucleotidesDsui_1401 and Dsui_1402 are separated by 97 nucleotidesDsui_1402 and Dsui_1403 overlap by 1 nucleotidesDsui_1403 and Dsui_1404 are separated by 19 nucleotides Dsui_1400: Dsui_1400 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,460,525 to 1,460,995 _1400 Dsui_1401: Dsui_1401 - surface lipoprotein, at 1,461,079 to 1,461,798 _1401 Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525 _1402 Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812 _1403 Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755 _1404 Position (kb) 1461 1462 1463Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1460.949 kb on + strandat 1460.986 kb on - strandat 1461.062 kb on - strandat 1461.095 kb on - strandat 1461.099 kb on + strandat 1461.120 kb on + strandat 1461.120 kb on + strandat 1461.150 kb on - strandat 1461.190 kb on + strand, within Dsui_1401at 1461.191 kb on - strand, within Dsui_1401at 1461.228 kb on + strand, within Dsui_1401at 1461.240 kb on + strand, within Dsui_1401at 1461.284 kb on - strandat 1461.291 kb on + strand, within Dsui_1401at 1461.637 kb on - strandat 1461.879 kb on + strandat 1462.045 kb on + strand, within Dsui_1402at 1462.141 kb on + strand, within Dsui_1402at 1462.336 kb on + strand, within Dsui_1402at 1462.514 kb on + strandat 1462.562 kb on + strand, within Dsui_1403at 1462.806 kb on + strandat 1462.807 kb on + strandat 1462.990 kb on + strand, within Dsui_1404at 1463.451 kb on + strand, within Dsui_1404

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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1,460,949 + -3.2
1,460,986 - -0.5
1,461,062 - +0.5
1,461,095 - +0.5
1,461,099 + -1.5
1,461,120 + -5.9
1,461,120 + -2.7
1,461,150 - -0.5
1,461,190 + Dsui_1401 0.15 -3.8
1,461,191 - Dsui_1401 0.16 +0.5
1,461,228 + Dsui_1401 0.21 -4.7
1,461,240 + Dsui_1401 0.22 -3.2
1,461,284 - +0.5
1,461,291 + Dsui_1401 0.29 -3.4
1,461,637 - +0.5
1,461,879 + -2.6
1,462,045 + Dsui_1402 0.24 -3.3
1,462,141 + Dsui_1402 0.39 -3.1
1,462,336 + Dsui_1402 0.70 -4.2
1,462,514 + -1.7
1,462,562 + Dsui_1403 0.13 -2.5
1,462,806 + -1.1
1,462,807 + -0.7
1,462,990 + Dsui_1404 0.17 -1.0
1,463,451 + Dsui_1404 0.67 -2.1

Or see this region's nucleotide sequence