Strain Fitness in Dechlorosoma suillum PS around Dsui_1181

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1179 and Dsui_1180 are separated by 286 nucleotidesDsui_1180 and Dsui_1181 overlap by 4 nucleotidesDsui_1181 and Dsui_1182 are separated by 72 nucleotides Dsui_1179: Dsui_1179 - ribosome-associated heat shock protein implicated in recycling of 50S subunit, at 1,232,849 to 1,233,268 _1179 Dsui_1180: Dsui_1180 - response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein, at 1,233,555 to 1,234,136 _1180 Dsui_1181: Dsui_1181 - signal transduction histidine kinase, at 1,234,133 to 1,235,533 _1181 Dsui_1182: Dsui_1182 - diaminopimelate decarboxylase, at 1,235,606 to 1,236,862 _1182 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -3 -2 -1 0 1at 1233.242 kb on + strandat 1233.257 kb on + strandat 1233.292 kb on - strandat 1233.396 kb on + strandat 1233.533 kb on + strandat 1233.593 kb on + strandat 1233.598 kb on - strandat 1233.684 kb on - strand, within Dsui_1180at 1233.754 kb on - strand, within Dsui_1180at 1233.791 kb on + strand, within Dsui_1180at 1233.899 kb on - strand, within Dsui_1180at 1233.917 kb on - strand, within Dsui_1180at 1233.927 kb on + strand, within Dsui_1180at 1233.960 kb on + strand, within Dsui_1180at 1233.968 kb on - strand, within Dsui_1180at 1233.968 kb on - strand, within Dsui_1180at 1234.067 kb on + strandat 1234.091 kb on - strandat 1234.124 kb on - strandat 1234.209 kb on + strandat 1234.219 kb on + strandat 1234.240 kb on + strandat 1234.240 kb on + strandat 1234.248 kb on - strandat 1234.349 kb on + strand, within Dsui_1181at 1234.396 kb on - strand, within Dsui_1181at 1234.396 kb on - strand, within Dsui_1181at 1234.403 kb on - strand, within Dsui_1181at 1234.479 kb on - strand, within Dsui_1181at 1234.500 kb on + strand, within Dsui_1181at 1234.648 kb on + strand, within Dsui_1181at 1234.683 kb on - strand, within Dsui_1181at 1234.683 kb on - strand, within Dsui_1181at 1234.683 kb on - strand, within Dsui_1181at 1234.684 kb on - strand, within Dsui_1181at 1234.714 kb on + strand, within Dsui_1181at 1234.714 kb on + strand, within Dsui_1181at 1234.729 kb on - strand, within Dsui_1181at 1234.759 kb on + strand, within Dsui_1181at 1234.825 kb on + strand, within Dsui_1181at 1234.845 kb on + strand, within Dsui_1181at 1234.847 kb on + strand, within Dsui_1181at 1234.860 kb on + strandat 1234.894 kb on + strand, within Dsui_1181at 1234.989 kb on - strand, within Dsui_1181at 1235.245 kb on + strand, within Dsui_1181at 1235.303 kb on - strand, within Dsui_1181at 1235.321 kb on + strand, within Dsui_1181at 1235.352 kb on - strand, within Dsui_1181at 1235.409 kb on + strandat 1235.416 kb on - strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.611 kb on + strandat 1235.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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1,233,242 + +0.5
1,233,257 + -1.8
1,233,292 - -1.1
1,233,396 + +0.5
1,233,533 + -1.1
1,233,593 + -1.1
1,233,598 - -1.5
1,233,684 - Dsui_1180 0.22 -2.3
1,233,754 - Dsui_1180 0.34 -1.3
1,233,791 + Dsui_1180 0.41 -0.5
1,233,899 - Dsui_1180 0.59 -0.2
1,233,917 - Dsui_1180 0.62 -1.9
1,233,927 + Dsui_1180 0.64 -1.5
1,233,960 + Dsui_1180 0.70 -0.5
1,233,968 - Dsui_1180 0.71 -1.4
1,233,968 - Dsui_1180 0.71 -0.7
1,234,067 + +0.5
1,234,091 - -1.7
1,234,124 - -1.1
1,234,209 + -1.1
1,234,219 + -3.1
1,234,240 + +0.5
1,234,240 + -2.5
1,234,248 - -1.3
1,234,349 + Dsui_1181 0.15 +0.5
1,234,396 - Dsui_1181 0.19 -1.4
1,234,396 - Dsui_1181 0.19 -0.4
1,234,403 - Dsui_1181 0.19 -0.2
1,234,479 - Dsui_1181 0.25 -0.5
1,234,500 + Dsui_1181 0.26 -1.5
1,234,648 + Dsui_1181 0.37 -1.5
1,234,683 - Dsui_1181 0.39 -1.1
1,234,683 - Dsui_1181 0.39 -0.8
1,234,683 - Dsui_1181 0.39 -0.8
1,234,684 - Dsui_1181 0.39 -1.2
1,234,714 + Dsui_1181 0.41 -0.5
1,234,714 + Dsui_1181 0.41 -1.8
1,234,729 - Dsui_1181 0.43 -1.1
1,234,759 + Dsui_1181 0.45 -1.8
1,234,825 + Dsui_1181 0.49 -0.5
1,234,845 + Dsui_1181 0.51 +0.5
1,234,847 + Dsui_1181 0.51 -3.1
1,234,860 + -1.5
1,234,894 + Dsui_1181 0.54 -1.5
1,234,989 - Dsui_1181 0.61 -0.4
1,235,245 + Dsui_1181 0.79 -1.5
1,235,303 - Dsui_1181 0.84 -1.1
1,235,321 + Dsui_1181 0.85 -2.1
1,235,352 - Dsui_1181 0.87 -1.1
1,235,409 + -2.3
1,235,416 - -1.2
1,235,604 + +0.5
1,235,604 + -1.5
1,235,604 + -0.5
1,235,604 + +0.5
1,235,604 + -2.3
1,235,611 + -0.8
1,235,612 - -1.1

Or see this region's nucleotide sequence