Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1130 and Dsui_1131 overlap by 4 nucleotides Dsui_1131 and Dsui_1132 are separated by 13 nucleotides Dsui_1132 and Dsui_1133 are separated by 61 nucleotides
Dsui_1130: Dsui_1130 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,182,125 to 1,185,283
_1130
Dsui_1131: Dsui_1131 - hypothetical protein, at 1,185,280 to 1,186,023
_1131
Dsui_1132: Dsui_1132 - hypothetical protein, at 1,186,037 to 1,186,678
_1132
Dsui_1133: Dsui_1133 - hypothetical protein, at 1,186,740 to 1,187,015
_1133
Position (kb)
1185
1186
1187 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1184.563 kb on - strand, within Dsui_1130 at 1184.596 kb on + strand, within Dsui_1130 at 1184.751 kb on + strand, within Dsui_1130 at 1184.910 kb on + strand, within Dsui_1130 at 1184.986 kb on - strand at 1185.116 kb on + strand at 1185.177 kb on - strand at 1185.217 kb on - strand at 1185.275 kb on + strand at 1185.362 kb on + strand, within Dsui_1131 at 1185.372 kb on + strand, within Dsui_1131 at 1185.398 kb on - strand, within Dsui_1131 at 1185.424 kb on + strand, within Dsui_1131 at 1185.580 kb on - strand, within Dsui_1131 at 1185.593 kb on + strand, within Dsui_1131 at 1185.599 kb on + strand, within Dsui_1131 at 1185.642 kb on + strand, within Dsui_1131 at 1185.688 kb on + strand, within Dsui_1131 at 1185.698 kb on + strand, within Dsui_1131 at 1185.732 kb on + strand, within Dsui_1131 at 1185.813 kb on + strand, within Dsui_1131 at 1185.824 kb on + strand, within Dsui_1131 at 1185.845 kb on + strand, within Dsui_1131 at 1185.928 kb on + strand, within Dsui_1131 at 1185.951 kb on - strand at 1185.992 kb on + strand at 1186.030 kb on - strand at 1186.034 kb on + strand at 1186.047 kb on - strand at 1186.071 kb on - strand at 1186.081 kb on + strand at 1186.081 kb on + strand at 1186.081 kb on + strand at 1186.089 kb on - strand at 1186.099 kb on + strand at 1186.197 kb on + strand, within Dsui_1132 at 1186.197 kb on + strand, within Dsui_1132 at 1186.205 kb on - strand, within Dsui_1132 at 1186.205 kb on - strand, within Dsui_1132 at 1186.242 kb on + strand, within Dsui_1132 at 1186.266 kb on + strand, within Dsui_1132 at 1186.374 kb on + strand, within Dsui_1132 at 1186.380 kb on + strand, within Dsui_1132 at 1186.411 kb on + strand, within Dsui_1132 at 1186.412 kb on - strand, within Dsui_1132 at 1186.431 kb on - strand, within Dsui_1132 at 1186.489 kb on - strand, within Dsui_1132 at 1186.491 kb on + strand, within Dsui_1132 at 1186.549 kb on - strand, within Dsui_1132 at 1186.549 kb on - strand, within Dsui_1132 at 1186.549 kb on - strand, within Dsui_1132 at 1186.584 kb on - strand, within Dsui_1132 at 1186.609 kb on + strand, within Dsui_1132 at 1186.631 kb on + strand at 1186.674 kb on - strand at 1186.737 kb on + strand at 1186.742 kb on - strand at 1186.747 kb on - strand at 1186.833 kb on + strand, within Dsui_1133 at 1186.833 kb on + strand, within Dsui_1133 at 1186.886 kb on - strand, within Dsui_1133 at 1186.935 kb on + strand, within Dsui_1133 at 1186.965 kb on + strand, within Dsui_1133 at 1187.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 1,184,563 - Dsui_1130 0.77 -0.5 1,184,596 + Dsui_1130 0.78 -1.0 1,184,751 + Dsui_1130 0.83 -2.8 1,184,910 + Dsui_1130 0.88 -2.5 1,184,986 - +0.5 1,185,116 + -0.5 1,185,177 - +0.5 1,185,217 - -2.0 1,185,275 + -0.0 1,185,362 + Dsui_1131 0.11 -1.3 1,185,372 + Dsui_1131 0.12 +0.5 1,185,398 - Dsui_1131 0.16 -0.5 1,185,424 + Dsui_1131 0.19 -1.3 1,185,580 - Dsui_1131 0.40 -0.5 1,185,593 + Dsui_1131 0.42 -0.8 1,185,599 + Dsui_1131 0.43 +0.5 1,185,642 + Dsui_1131 0.49 -0.5 1,185,688 + Dsui_1131 0.55 +1.5 1,185,698 + Dsui_1131 0.56 -3.0 1,185,732 + Dsui_1131 0.61 -1.0 1,185,813 + Dsui_1131 0.72 -0.5 1,185,824 + Dsui_1131 0.73 +0.3 1,185,845 + Dsui_1131 0.76 +0.5 1,185,928 + Dsui_1131 0.87 +0.5 1,185,951 - -1.0 1,185,992 + -1.0 1,186,030 - +0.5 1,186,034 + -0.9 1,186,047 - +0.5 1,186,071 - +0.5 1,186,081 + -0.0 1,186,081 + -2.3 1,186,081 + +0.5 1,186,089 - -1.5 1,186,099 + -1.2 1,186,197 + Dsui_1132 0.25 +1.0 1,186,197 + Dsui_1132 0.25 -1.0 1,186,205 - Dsui_1132 0.26 -1.8 1,186,205 - Dsui_1132 0.26 +0.5 1,186,242 + Dsui_1132 0.32 +0.5 1,186,266 + Dsui_1132 0.36 -1.8 1,186,374 + Dsui_1132 0.52 -0.8 1,186,380 + Dsui_1132 0.53 -0.5 1,186,411 + Dsui_1132 0.58 +0.5 1,186,412 - Dsui_1132 0.58 -2.8 1,186,431 - Dsui_1132 0.61 +0.5 1,186,489 - Dsui_1132 0.70 -0.5 1,186,491 + Dsui_1132 0.71 -2.9 1,186,549 - Dsui_1132 0.80 -1.8 1,186,549 - Dsui_1132 0.80 +0.5 1,186,549 - Dsui_1132 0.80 -0.5 1,186,584 - Dsui_1132 0.85 -0.5 1,186,609 + Dsui_1132 0.89 -0.0 1,186,631 + -1.5 1,186,674 - +0.5 1,186,737 + +0.5 1,186,742 - -1.8 1,186,747 - +0.5 1,186,833 + Dsui_1133 0.34 +0.5 1,186,833 + Dsui_1133 0.34 -0.6 1,186,886 - Dsui_1133 0.53 -0.5 1,186,935 + Dsui_1133 0.71 -0.8 1,186,965 + Dsui_1133 0.82 -0.5 1,187,018 + -1.6
Or see this region's nucleotide sequence