Strain Fitness in Dechlorosoma suillum PS around Dsui_1131

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1130 and Dsui_1131 overlap by 4 nucleotidesDsui_1131 and Dsui_1132 are separated by 13 nucleotidesDsui_1132 and Dsui_1133 are separated by 61 nucleotides Dsui_1130: Dsui_1130 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,182,125 to 1,185,283 _1130 Dsui_1131: Dsui_1131 - hypothetical protein, at 1,185,280 to 1,186,023 _1131 Dsui_1132: Dsui_1132 - hypothetical protein, at 1,186,037 to 1,186,678 _1132 Dsui_1133: Dsui_1133 - hypothetical protein, at 1,186,740 to 1,187,015 _1133 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -3 -2 -1 0 1at 1184.563 kb on - strand, within Dsui_1130at 1184.596 kb on + strand, within Dsui_1130at 1184.751 kb on + strand, within Dsui_1130at 1184.910 kb on + strand, within Dsui_1130at 1184.986 kb on - strandat 1185.116 kb on + strandat 1185.177 kb on - strandat 1185.217 kb on - strandat 1185.275 kb on + strandat 1185.362 kb on + strand, within Dsui_1131at 1185.372 kb on + strand, within Dsui_1131at 1185.398 kb on - strand, within Dsui_1131at 1185.424 kb on + strand, within Dsui_1131at 1185.580 kb on - strand, within Dsui_1131at 1185.593 kb on + strand, within Dsui_1131at 1185.599 kb on + strand, within Dsui_1131at 1185.642 kb on + strand, within Dsui_1131at 1185.688 kb on + strand, within Dsui_1131at 1185.698 kb on + strand, within Dsui_1131at 1185.732 kb on + strand, within Dsui_1131at 1185.813 kb on + strand, within Dsui_1131at 1185.824 kb on + strand, within Dsui_1131at 1185.845 kb on + strand, within Dsui_1131at 1185.928 kb on + strand, within Dsui_1131at 1185.951 kb on - strandat 1185.992 kb on + strandat 1186.030 kb on - strandat 1186.034 kb on + strandat 1186.047 kb on - strandat 1186.071 kb on - strandat 1186.081 kb on + strandat 1186.081 kb on + strandat 1186.081 kb on + strandat 1186.089 kb on - strandat 1186.099 kb on + strandat 1186.197 kb on + strand, within Dsui_1132at 1186.197 kb on + strand, within Dsui_1132at 1186.205 kb on - strand, within Dsui_1132at 1186.205 kb on - strand, within Dsui_1132at 1186.242 kb on + strand, within Dsui_1132at 1186.266 kb on + strand, within Dsui_1132at 1186.374 kb on + strand, within Dsui_1132at 1186.380 kb on + strand, within Dsui_1132at 1186.411 kb on + strand, within Dsui_1132at 1186.412 kb on - strand, within Dsui_1132at 1186.431 kb on - strand, within Dsui_1132at 1186.489 kb on - strand, within Dsui_1132at 1186.491 kb on + strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.584 kb on - strand, within Dsui_1132at 1186.609 kb on + strand, within Dsui_1132at 1186.631 kb on + strandat 1186.674 kb on - strandat 1186.737 kb on + strandat 1186.742 kb on - strandat 1186.747 kb on - strandat 1186.833 kb on + strand, within Dsui_1133at 1186.833 kb on + strand, within Dsui_1133at 1186.886 kb on - strand, within Dsui_1133at 1186.935 kb on + strand, within Dsui_1133at 1186.965 kb on + strand, within Dsui_1133at 1187.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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1,184,563 - Dsui_1130 0.77 -0.5
1,184,596 + Dsui_1130 0.78 -1.0
1,184,751 + Dsui_1130 0.83 -2.8
1,184,910 + Dsui_1130 0.88 -2.5
1,184,986 - +0.5
1,185,116 + -0.5
1,185,177 - +0.5
1,185,217 - -2.0
1,185,275 + -0.0
1,185,362 + Dsui_1131 0.11 -1.3
1,185,372 + Dsui_1131 0.12 +0.5
1,185,398 - Dsui_1131 0.16 -0.5
1,185,424 + Dsui_1131 0.19 -1.3
1,185,580 - Dsui_1131 0.40 -0.5
1,185,593 + Dsui_1131 0.42 -0.8
1,185,599 + Dsui_1131 0.43 +0.5
1,185,642 + Dsui_1131 0.49 -0.5
1,185,688 + Dsui_1131 0.55 +1.5
1,185,698 + Dsui_1131 0.56 -3.0
1,185,732 + Dsui_1131 0.61 -1.0
1,185,813 + Dsui_1131 0.72 -0.5
1,185,824 + Dsui_1131 0.73 +0.3
1,185,845 + Dsui_1131 0.76 +0.5
1,185,928 + Dsui_1131 0.87 +0.5
1,185,951 - -1.0
1,185,992 + -1.0
1,186,030 - +0.5
1,186,034 + -0.9
1,186,047 - +0.5
1,186,071 - +0.5
1,186,081 + -0.0
1,186,081 + -2.3
1,186,081 + +0.5
1,186,089 - -1.5
1,186,099 + -1.2
1,186,197 + Dsui_1132 0.25 +1.0
1,186,197 + Dsui_1132 0.25 -1.0
1,186,205 - Dsui_1132 0.26 -1.8
1,186,205 - Dsui_1132 0.26 +0.5
1,186,242 + Dsui_1132 0.32 +0.5
1,186,266 + Dsui_1132 0.36 -1.8
1,186,374 + Dsui_1132 0.52 -0.8
1,186,380 + Dsui_1132 0.53 -0.5
1,186,411 + Dsui_1132 0.58 +0.5
1,186,412 - Dsui_1132 0.58 -2.8
1,186,431 - Dsui_1132 0.61 +0.5
1,186,489 - Dsui_1132 0.70 -0.5
1,186,491 + Dsui_1132 0.71 -2.9
1,186,549 - Dsui_1132 0.80 -1.8
1,186,549 - Dsui_1132 0.80 +0.5
1,186,549 - Dsui_1132 0.80 -0.5
1,186,584 - Dsui_1132 0.85 -0.5
1,186,609 + Dsui_1132 0.89 -0.0
1,186,631 + -1.5
1,186,674 - +0.5
1,186,737 + +0.5
1,186,742 - -1.8
1,186,747 - +0.5
1,186,833 + Dsui_1133 0.34 +0.5
1,186,833 + Dsui_1133 0.34 -0.6
1,186,886 - Dsui_1133 0.53 -0.5
1,186,935 + Dsui_1133 0.71 -0.8
1,186,965 + Dsui_1133 0.82 -0.5
1,187,018 + -1.6

Or see this region's nucleotide sequence