Strain Fitness in Dechlorosoma suillum PS around Dsui_1124

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1123 and Dsui_1124 are separated by 49 nucleotidesDsui_1124 and Dsui_1125 are separated by 61 nucleotides Dsui_1123: Dsui_1123 - methyl-accepting chemotaxis protein, at 1,171,228 to 1,172,841 _1123 Dsui_1124: Dsui_1124 - prolipoprotein diacylglyceryl transferase, at 1,172,891 to 1,173,676 _1124 Dsui_1125: Dsui_1125 - Malonyl-CoA decarboxylase (MCD), at 1,173,738 to 1,175,066 _1125 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1171.897 kb on + strand, within Dsui_1123at 1171.900 kb on - strand, within Dsui_1123at 1172.097 kb on + strand, within Dsui_1123at 1172.112 kb on - strand, within Dsui_1123at 1172.198 kb on - strand, within Dsui_1123at 1172.213 kb on + strand, within Dsui_1123at 1172.242 kb on + strand, within Dsui_1123at 1172.273 kb on + strand, within Dsui_1123at 1172.490 kb on + strand, within Dsui_1123at 1172.493 kb on - strand, within Dsui_1123at 1172.515 kb on + strand, within Dsui_1123at 1172.525 kb on + strand, within Dsui_1123at 1172.532 kb on - strand, within Dsui_1123at 1172.799 kb on + strandat 1172.799 kb on + strandat 1172.807 kb on - strandat 1172.863 kb on + strandat 1173.702 kb on - strandat 1173.807 kb on + strandat 1173.820 kb on + strandat 1173.859 kb on - strandat 1174.509 kb on - strand, within Dsui_1125at 1174.510 kb on - strand, within Dsui_1125at 1174.586 kb on + strand, within Dsui_1125at 1174.594 kb on - strand, within Dsui_1125at 1174.604 kb on + strand, within Dsui_1125at 1174.621 kb on + strand, within Dsui_1125at 1174.621 kb on + strand, within Dsui_1125at 1174.629 kb on - strand, within Dsui_1125

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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1,171,897 + Dsui_1123 0.41 -4.0
1,171,900 - Dsui_1123 0.42 +0.5
1,172,097 + Dsui_1123 0.54 -1.5
1,172,112 - Dsui_1123 0.55 -1.5
1,172,198 - Dsui_1123 0.60 -1.5
1,172,213 + Dsui_1123 0.61 -0.9
1,172,242 + Dsui_1123 0.63 -1.5
1,172,273 + Dsui_1123 0.65 -0.8
1,172,490 + Dsui_1123 0.78 -1.2
1,172,493 - Dsui_1123 0.78 +0.5
1,172,515 + Dsui_1123 0.80 -1.8
1,172,525 + Dsui_1123 0.80 -0.0
1,172,532 - Dsui_1123 0.81 -0.5
1,172,799 + -1.5
1,172,799 + -1.7
1,172,807 - -0.5
1,172,863 + -0.8
1,173,702 - +0.5
1,173,807 + -0.7
1,173,820 + -0.6
1,173,859 - -1.0
1,174,509 - Dsui_1125 0.58 -1.0
1,174,510 - Dsui_1125 0.58 -0.5
1,174,586 + Dsui_1125 0.64 +3.1
1,174,594 - Dsui_1125 0.64 +0.5
1,174,604 + Dsui_1125 0.65 -1.0
1,174,621 + Dsui_1125 0.66 -0.8
1,174,621 + Dsui_1125 0.66 -0.6
1,174,629 - Dsui_1125 0.67 -1.8

Or see this region's nucleotide sequence