Strain Fitness in Dechlorosoma suillum PS around Dsui_0919

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0917 and Dsui_0918 overlap by 4 nucleotidesDsui_0918 and Dsui_0919 are separated by 336 nucleotidesDsui_0919 and Dsui_0920 overlap by 4 nucleotidesDsui_0920 and Dsui_0921 overlap by 4 nucleotides Dsui_0917: Dsui_0917 - integrase family protein, at 939,922 to 941,823 _0917 Dsui_0918: Dsui_0918 - TnsA endonuclease N terminal protein, at 941,820 to 942,467 _0918 Dsui_0919: Dsui_0919 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 942,804 to 943,955 _0919 Dsui_0920: Dsui_0920 - fructose-2,6-bisphosphatase, at 943,952 to 944,620 _0920 Dsui_0921: Dsui_0921 - PAS domain S-box, at 944,617 to 948,909 _0921 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1at 941.809 kb on + strandat 941.907 kb on + strand, within Dsui_0918at 941.908 kb on + strand, within Dsui_0918at 941.922 kb on + strand, within Dsui_0918at 941.937 kb on - strand, within Dsui_0918at 941.941 kb on + strand, within Dsui_0918at 941.960 kb on - strand, within Dsui_0918at 942.005 kb on + strand, within Dsui_0918at 942.017 kb on + strand, within Dsui_0918at 942.092 kb on + strand, within Dsui_0918at 942.125 kb on + strand, within Dsui_0918at 942.144 kb on - strandat 942.159 kb on + strand, within Dsui_0918at 942.159 kb on - strand, within Dsui_0918at 942.159 kb on - strand, within Dsui_0918at 942.164 kb on + strand, within Dsui_0918at 942.164 kb on + strand, within Dsui_0918at 942.164 kb on + strandat 942.167 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.172 kb on - strand, within Dsui_0918at 942.177 kb on - strand, within Dsui_0918at 942.177 kb on - strand, within Dsui_0918at 942.195 kb on + strand, within Dsui_0918at 942.217 kb on + strand, within Dsui_0918at 942.220 kb on - strand, within Dsui_0918at 942.220 kb on - strand, within Dsui_0918at 942.227 kb on + strand, within Dsui_0918at 942.254 kb on + strand, within Dsui_0918at 942.262 kb on + strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.262 kb on - strand, within Dsui_0918at 942.268 kb on - strand, within Dsui_0918at 942.272 kb on + strand, within Dsui_0918at 942.358 kb on + strand, within Dsui_0918at 942.530 kb on + strandat 942.569 kb on - strandat 942.589 kb on + strandat 942.707 kb on + strandat 942.852 kb on - strandat 943.010 kb on + strand, within Dsui_0919at 943.073 kb on + strand, within Dsui_0919at 943.153 kb on - strand, within Dsui_0919at 943.183 kb on - strand, within Dsui_0919at 943.187 kb on + strand, within Dsui_0919at 943.277 kb on + strand, within Dsui_0919at 943.284 kb on - strand, within Dsui_0919at 943.285 kb on - strand, within Dsui_0919at 943.361 kb on + strand, within Dsui_0919at 943.369 kb on - strand, within Dsui_0919at 943.396 kb on - strand, within Dsui_0919at 943.478 kb on + strand, within Dsui_0919at 943.595 kb on + strand, within Dsui_0919at 943.644 kb on + strand, within Dsui_0919at 944.206 kb on + strand, within Dsui_0920at 944.341 kb on + strand, within Dsui_0920at 944.595 kb on + strandat 944.595 kb on + strandat 944.595 kb on + strandat 944.595 kb on + strandat 944.603 kb on - strandat 944.635 kb on + strandat 944.830 kb on - strandat 944.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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941,809 + +0.6
941,907 + Dsui_0918 0.13 -1.4
941,908 + Dsui_0918 0.14 +0.6
941,922 + Dsui_0918 0.16 +1.6
941,937 - Dsui_0918 0.18 -0.4
941,941 + Dsui_0918 0.19 +0.6
941,960 - Dsui_0918 0.22 +0.6
942,005 + Dsui_0918 0.29 -0.4
942,017 + Dsui_0918 0.30 +0.6
942,092 + Dsui_0918 0.42 +0.6
942,125 + Dsui_0918 0.47 -0.9
942,144 - +0.6
942,159 + Dsui_0918 0.52 -1.7
942,159 - Dsui_0918 0.52 +0.6
942,159 - Dsui_0918 0.52 -0.4
942,164 + Dsui_0918 0.53 -1.4
942,164 + Dsui_0918 0.53 +0.6
942,164 + -0.9
942,167 - Dsui_0918 0.54 +0.6
942,172 - Dsui_0918 0.54 +0.6
942,172 - Dsui_0918 0.54 +0.6
942,172 - Dsui_0918 0.54 +0.6
942,172 - Dsui_0918 0.54 +0.6
942,172 - Dsui_0918 0.54 -0.4
942,177 - Dsui_0918 0.55 -0.9
942,177 - Dsui_0918 0.55 +0.6
942,195 + Dsui_0918 0.58 -0.4
942,217 + Dsui_0918 0.61 +0.6
942,220 - Dsui_0918 0.62 -0.9
942,220 - Dsui_0918 0.62 -2.9
942,227 + Dsui_0918 0.63 +0.6
942,254 + Dsui_0918 0.67 -0.9
942,262 + Dsui_0918 0.68 +0.6
942,262 - Dsui_0918 0.68 -0.4
942,262 - Dsui_0918 0.68 -0.4
942,262 - Dsui_0918 0.68 +0.6
942,268 - Dsui_0918 0.69 +0.6
942,272 + Dsui_0918 0.70 -1.4
942,358 + Dsui_0918 0.83 -0.4
942,530 + +0.6
942,569 - -0.4
942,589 + +0.6
942,707 + +0.6
942,852 - -1.4
943,010 + Dsui_0919 0.18 +0.2
943,073 + Dsui_0919 0.23 -1.1
943,153 - Dsui_0919 0.30 -0.9
943,183 - Dsui_0919 0.33 -0.4
943,187 + Dsui_0919 0.33 -1.9
943,277 + Dsui_0919 0.41 +0.6
943,284 - Dsui_0919 0.42 -0.4
943,285 - Dsui_0919 0.42 -0.9
943,361 + Dsui_0919 0.48 +0.6
943,369 - Dsui_0919 0.49 +0.6
943,396 - Dsui_0919 0.51 +0.6
943,478 + Dsui_0919 0.59 -1.2
943,595 + Dsui_0919 0.69 -1.7
943,644 + Dsui_0919 0.73 -1.4
944,206 + Dsui_0920 0.38 -0.9
944,341 + Dsui_0920 0.58 +0.6
944,595 + -2.2
944,595 + +0.6
944,595 + +0.6
944,595 + -0.4
944,603 - -1.4
944,635 + -0.4
944,830 - +0.6
944,846 - -0.4

Or see this region's nucleotide sequence