Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0864 and Dsui_0865 are separated by 16 nucleotides Dsui_0865 and Dsui_0866 are separated by 269 nucleotides
Dsui_0864: Dsui_0864 - phosphate regulon sensor kinase PhoR, at 878,302 to 879,603
_0864
Dsui_0865: Dsui_0865 - hypothetical protein, at 879,620 to 881,233
_0865
Dsui_0866: Dsui_0866 - hypothetical protein, at 881,503 to 883,098
_0866
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 878.633 kb on + strand, within Dsui_0864 at 878.699 kb on + strand, within Dsui_0864 at 878.777 kb on - strand, within Dsui_0864 at 878.817 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.891 kb on + strand, within Dsui_0864 at 878.906 kb on - strand, within Dsui_0864 at 878.962 kb on + strand, within Dsui_0864 at 879.041 kb on + strand, within Dsui_0864 at 879.042 kb on - strand, within Dsui_0864 at 879.049 kb on - strand, within Dsui_0864 at 879.061 kb on + strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.086 kb on + strand, within Dsui_0864 at 879.178 kb on - strand, within Dsui_0864 at 879.195 kb on - strand at 879.200 kb on + strand, within Dsui_0864 at 879.260 kb on + strand, within Dsui_0864 at 879.353 kb on + strand, within Dsui_0864 at 879.410 kb on + strand, within Dsui_0864 at 879.419 kb on + strand, within Dsui_0864 at 879.504 kb on + strand at 879.554 kb on - strand at 879.569 kb on - strand at 879.584 kb on - strand at 879.588 kb on + strand at 879.631 kb on + strand at 879.631 kb on + strand at 879.663 kb on + strand at 879.671 kb on - strand at 879.746 kb on + strand at 879.759 kb on - strand at 879.800 kb on + strand, within Dsui_0865 at 879.858 kb on + strand, within Dsui_0865 at 879.888 kb on - strand, within Dsui_0865 at 880.094 kb on - strand, within Dsui_0865 at 880.178 kb on - strand at 880.231 kb on - strand, within Dsui_0865 at 880.286 kb on + strand at 880.333 kb on + strand at 880.402 kb on - strand, within Dsui_0865 at 880.581 kb on + strand, within Dsui_0865 at 880.626 kb on - strand, within Dsui_0865 at 880.632 kb on - strand, within Dsui_0865 at 880.667 kb on - strand, within Dsui_0865 at 880.818 kb on + strand at 880.818 kb on + strand, within Dsui_0865 at 880.818 kb on + strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.828 kb on + strand at 880.831 kb on - strand, within Dsui_0865 at 880.836 kb on - strand, within Dsui_0865 at 880.841 kb on - strand at 880.888 kb on - strand at 880.919 kb on + strand, within Dsui_0865 at 880.927 kb on - strand at 880.993 kb on - strand, within Dsui_0865 at 881.012 kb on + strand at 881.051 kb on - strand at 881.125 kb on - strand at 881.146 kb on - strand at 881.401 kb on - strand at 881.525 kb on + strand at 881.574 kb on - strand at 881.638 kb on - strand at 881.745 kb on + strand, within Dsui_0866 at 881.805 kb on + strand, within Dsui_0866 at 881.907 kb on + strand, within Dsui_0866 at 881.907 kb on + strand, within Dsui_0866 at 882.013 kb on - strand, within Dsui_0866 at 882.081 kb on + strand, within Dsui_0866 at 882.169 kb on + strand, within Dsui_0866 at 882.185 kb on - strand, within Dsui_0866 at 882.191 kb on + strand, within Dsui_0866
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 878,633 + Dsui_0864 0.25 -0.8 878,699 + Dsui_0864 0.30 -2.6 878,777 - Dsui_0864 0.36 -1.5 878,817 + Dsui_0864 0.40 -1.6 878,824 + Dsui_0864 0.40 -2.0 878,824 + Dsui_0864 0.40 -0.0 878,872 - Dsui_0864 0.44 -0.4 878,872 - Dsui_0864 0.44 -1.7 878,891 + Dsui_0864 0.45 -1.5 878,906 - Dsui_0864 0.46 -0.4 878,962 + Dsui_0864 0.51 -1.9 879,041 + Dsui_0864 0.57 -0.8 879,042 - Dsui_0864 0.57 -0.4 879,049 - Dsui_0864 0.57 -1.0 879,061 + Dsui_0864 0.58 -0.2 879,071 - Dsui_0864 0.59 -2.6 879,071 - Dsui_0864 0.59 +0.0 879,086 + Dsui_0864 0.60 -1.6 879,178 - Dsui_0864 0.67 -1.0 879,195 - +0.6 879,200 + Dsui_0864 0.69 -0.1 879,260 + Dsui_0864 0.74 -1.6 879,353 + Dsui_0864 0.81 -0.7 879,410 + Dsui_0864 0.85 -0.7 879,419 + Dsui_0864 0.86 -1.7 879,504 + -1.5 879,554 - -1.4 879,569 - -2.2 879,584 - -0.4 879,588 + -2.2 879,631 + -1.0 879,631 + -0.4 879,663 + -2.6 879,671 - +0.6 879,746 + +0.6 879,759 - -0.8 879,800 + Dsui_0865 0.11 -1.7 879,858 + Dsui_0865 0.15 -1.4 879,888 - Dsui_0865 0.17 -1.0 880,094 - Dsui_0865 0.29 +0.6 880,178 - +0.6 880,231 - Dsui_0865 0.38 -1.4 880,286 + +0.6 880,333 + +0.6 880,402 - Dsui_0865 0.48 -1.4 880,581 + Dsui_0865 0.60 -1.4 880,626 - Dsui_0865 0.62 -2.6 880,632 - Dsui_0865 0.63 -1.7 880,667 - Dsui_0865 0.65 -2.2 880,818 + +0.6 880,818 + Dsui_0865 0.74 -1.0 880,818 + Dsui_0865 0.74 -0.4 880,826 - Dsui_0865 0.75 -1.4 880,826 - Dsui_0865 0.75 -0.4 880,826 - Dsui_0865 0.75 -2.2 880,826 - Dsui_0865 0.75 -1.4 880,828 + +0.6 880,831 - Dsui_0865 0.75 -0.4 880,836 - Dsui_0865 0.75 -0.4 880,841 - +0.6 880,888 - +0.6 880,919 + Dsui_0865 0.80 -1.0 880,927 - +0.6 880,993 - Dsui_0865 0.85 -1.7 881,012 + -0.4 881,051 - +0.6 881,125 - -1.4 881,146 - +0.6 881,401 - -2.3 881,525 + +0.6 881,574 - -1.0 881,638 - -3.6 881,745 + Dsui_0866 0.15 -1.0 881,805 + Dsui_0866 0.19 -0.4 881,907 + Dsui_0866 0.25 -0.4 881,907 + Dsui_0866 0.25 -3.3 882,013 - Dsui_0866 0.32 -1.7 882,081 + Dsui_0866 0.36 -0.4 882,169 + Dsui_0866 0.42 -0.4 882,185 - Dsui_0866 0.43 -1.8 882,191 + Dsui_0866 0.43 -1.0
Or see this region's nucleotide sequence