Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0686 and Dsui_0687 overlap by 17 nucleotides Dsui_0687 and Dsui_0688 are separated by 95 nucleotides Dsui_0688 and Dsui_0689 overlap by 1 nucleotides Dsui_0689 and Dsui_0690 are separated by 72 nucleotides
Dsui_0686: Dsui_0686 - tRNA nucleotidyltransferase/poly(A) polymerase, at 684,017 to 685,237
_0686
Dsui_0687: Dsui_0687 - Protein of unknown function (DUF2905), at 685,221 to 685,412
_0687
Dsui_0688: Dsui_0688 - glutathione S-transferase, at 685,508 to 686,125
_0688
Dsui_0689: Dsui_0689 - lysophospholipase, at 686,125 to 686,937
_0689
Dsui_0690: Dsui_0690 - hypothetical protein, at 687,010 to 687,204
_0690
Position (kb) 685
686
687 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 685.268 kb on - strand, within Dsui_0687 at 685.274 kb on - strand, within Dsui_0687 at 685.318 kb on - strand, within Dsui_0687 at 685.379 kb on + strand, within Dsui_0687 at 685.387 kb on - strand, within Dsui_0687 at 685.422 kb on - strand at 685.493 kb on + strand at 685.501 kb on - strand at 685.513 kb on - strand at 685.514 kb on + strand at 685.525 kb on - strand at 685.574 kb on + strand, within Dsui_0688 at 685.579 kb on + strand, within Dsui_0688 at 685.579 kb on + strand, within Dsui_0688 at 685.579 kb on + strand, within Dsui_0688 at 685.579 kb on + strand, within Dsui_0688 at 685.587 kb on - strand at 685.587 kb on - strand, within Dsui_0688 at 685.587 kb on - strand, within Dsui_0688 at 685.587 kb on - strand, within Dsui_0688 at 685.587 kb on - strand, within Dsui_0688 at 685.587 kb on - strand at 685.616 kb on - strand at 685.616 kb on - strand, within Dsui_0688 at 685.641 kb on - strand, within Dsui_0688 at 685.701 kb on + strand, within Dsui_0688 at 685.776 kb on + strand, within Dsui_0688 at 685.877 kb on - strand, within Dsui_0688 at 685.921 kb on + strand, within Dsui_0688 at 685.921 kb on + strand, within Dsui_0688 at 685.940 kb on + strand, within Dsui_0688 at 685.952 kb on + strand, within Dsui_0688 at 685.952 kb on + strand, within Dsui_0688 at 686.001 kb on + strand, within Dsui_0688 at 686.106 kb on + strand at 686.114 kb on - strand at 686.114 kb on - strand at 686.190 kb on + strand at 686.329 kb on + strand at 686.329 kb on + strand, within Dsui_0689 at 686.435 kb on - strand, within Dsui_0689 at 686.446 kb on + strand, within Dsui_0689 at 686.485 kb on + strand, within Dsui_0689 at 686.559 kb on + strand, within Dsui_0689 at 686.588 kb on - strand, within Dsui_0689 at 686.797 kb on + strand, within Dsui_0689 at 686.905 kb on + strand at 686.925 kb on - strand at 686.998 kb on + strand at 687.016 kb on - strand at 687.028 kb on - strand at 687.051 kb on + strand, within Dsui_0690 at 687.059 kb on - strand, within Dsui_0690 at 687.069 kb on - strand, within Dsui_0690 at 687.095 kb on + strand, within Dsui_0690 at 687.110 kb on + strand, within Dsui_0690
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 685,268 - Dsui_0687 0.24 -0.7 685,274 - Dsui_0687 0.28 -2.1 685,318 - Dsui_0687 0.51 -0.1 685,379 + Dsui_0687 0.82 -2.4 685,387 - Dsui_0687 0.86 -1.1 685,422 - -1.2 685,493 + -0.9 685,501 - -0.4 685,513 - +0.6 685,514 + -0.6 685,525 - +0.6 685,574 + Dsui_0688 0.11 -1.4 685,579 + Dsui_0688 0.11 -1.0 685,579 + Dsui_0688 0.11 -1.7 685,579 + Dsui_0688 0.11 -1.3 685,579 + Dsui_0688 0.11 -3.0 685,587 - +0.6 685,587 - Dsui_0688 0.13 -1.7 685,587 - Dsui_0688 0.13 -1.4 685,587 - Dsui_0688 0.13 +2.6 685,587 - Dsui_0688 0.13 -1.4 685,587 - -0.4 685,616 - +0.6 685,616 - Dsui_0688 0.17 -1.7 685,641 - Dsui_0688 0.22 -3.2 685,701 + Dsui_0688 0.31 -1.7 685,776 + Dsui_0688 0.43 -0.4 685,877 - Dsui_0688 0.60 +0.6 685,921 + Dsui_0688 0.67 -1.0 685,921 + Dsui_0688 0.67 -3.9 685,940 + Dsui_0688 0.70 -0.7 685,952 + Dsui_0688 0.72 -2.6 685,952 + Dsui_0688 0.72 -2.2 686,001 + Dsui_0688 0.80 -2.4 686,106 + -0.1 686,114 - -0.4 686,114 - -1.0 686,190 + -0.4 686,329 + +0.6 686,329 + Dsui_0689 0.25 -1.3 686,435 - Dsui_0689 0.38 +0.6 686,446 + Dsui_0689 0.39 -0.0 686,485 + Dsui_0689 0.44 -1.3 686,559 + Dsui_0689 0.53 -2.6 686,588 - Dsui_0689 0.57 -1.0 686,797 + Dsui_0689 0.83 -1.0 686,905 + -1.2 686,925 - -1.0 686,998 + -1.4 687,016 - -1.1 687,028 - -0.5 687,051 + Dsui_0690 0.21 -1.0 687,059 - Dsui_0690 0.25 -0.5 687,069 - Dsui_0690 0.30 -0.4 687,095 + Dsui_0690 0.44 -2.4 687,110 + Dsui_0690 0.51 -0.4
Or see this region's nucleotide sequence