Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0640 and Dsui_0641 overlap by 4 nucleotides Dsui_0641 and Dsui_0642 are separated by 61 nucleotides Dsui_0642 and Dsui_0643 are separated by 236 nucleotides
Dsui_0640: Dsui_0640 - 5,10-methylenetetrahydrofolate reductase, at 633,112 to 633,951
_0640
Dsui_0641: Dsui_0641 - putative rRNA methylase, at 633,948 to 634,205
_0641
Dsui_0642: Dsui_0642 - adenosylhomocysteinase, at 634,267 to 635,667
_0642
Dsui_0643: Dsui_0643 - HD-GYP domain-containing protein, at 635,904 to 637,133
_0643
Position (kb) 634
635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 633.980 kb on + strand, within Dsui_0641 at 634.058 kb on + strand, within Dsui_0641 at 634.169 kb on + strand, within Dsui_0641 at 634.258 kb on + strand at 635.833 kb on + strand at 635.833 kb on + strand at 635.901 kb on + strand at 635.902 kb on + strand at 635.990 kb on + strand at 635.998 kb on - strand at 636.003 kb on - strand at 636.025 kb on + strand at 636.055 kb on + strand, within Dsui_0643 at 636.063 kb on - strand, within Dsui_0643 at 636.064 kb on - strand, within Dsui_0643 at 636.100 kb on - strand, within Dsui_0643 at 636.103 kb on + strand, within Dsui_0643 at 636.171 kb on + strand, within Dsui_0643 at 636.243 kb on - strand, within Dsui_0643 at 636.247 kb on - strand, within Dsui_0643 at 636.311 kb on - strand, within Dsui_0643 at 636.331 kb on + strand, within Dsui_0643 at 636.430 kb on + strand, within Dsui_0643 at 636.457 kb on - strand, within Dsui_0643 at 636.523 kb on - strand, within Dsui_0643 at 636.623 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 633,980 + Dsui_0641 0.12 -2.4 634,058 + Dsui_0641 0.43 -1.4 634,169 + Dsui_0641 0.86 -1.0 634,258 + +0.6 635,833 + -1.0 635,833 + +0.6 635,901 + +0.6 635,902 + +0.6 635,990 + +0.6 635,998 - -1.6 636,003 - -0.1 636,025 + +0.6 636,055 + Dsui_0643 0.12 +0.6 636,063 - Dsui_0643 0.13 -3.4 636,064 - Dsui_0643 0.13 -1.4 636,100 - Dsui_0643 0.16 -0.7 636,103 + Dsui_0643 0.16 +0.6 636,171 + Dsui_0643 0.22 +0.6 636,243 - Dsui_0643 0.28 -1.3 636,247 - Dsui_0643 0.28 -1.3 636,311 - Dsui_0643 0.33 -0.7 636,331 + Dsui_0643 0.35 +0.6 636,430 + Dsui_0643 0.43 -0.4 636,457 - Dsui_0643 0.45 -1.5 636,523 - Dsui_0643 0.50 +0.0 636,623 + +0.6
Or see this region's nucleotide sequence