Experiment: ALP with Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0294 and Dsui_0295 are separated by 19 nucleotides Dsui_0295 and Dsui_0296 overlap by 4 nucleotides
Dsui_0294: Dsui_0294 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 293,409 to 294,920
_0294
Dsui_0295: Dsui_0295 - hypothetical protein, at 294,940 to 297,729
_0295
Dsui_0296: Dsui_0296 - hypothetical protein, at 297,726 to 298,508
_0296
Position (kb) 294
295
296
297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 293.974 kb on + strand at 294.021 kb on + strand, within Dsui_0294 at 294.043 kb on + strand at 294.053 kb on + strand, within Dsui_0294 at 294.200 kb on - strand at 294.268 kb on - strand, within Dsui_0294 at 294.324 kb on + strand, within Dsui_0294 at 294.332 kb on - strand at 294.339 kb on + strand, within Dsui_0294 at 294.512 kb on + strand, within Dsui_0294 at 294.514 kb on + strand, within Dsui_0294 at 294.557 kb on + strand, within Dsui_0294 at 294.577 kb on - strand, within Dsui_0294 at 294.599 kb on + strand, within Dsui_0294 at 294.619 kb on + strand, within Dsui_0294 at 294.719 kb on + strand, within Dsui_0294 at 294.727 kb on - strand at 295.053 kb on + strand at 295.079 kb on + strand at 295.112 kb on + strand at 295.120 kb on - strand at 295.122 kb on + strand at 295.144 kb on - strand at 295.154 kb on - strand at 295.177 kb on + strand at 295.190 kb on + strand at 295.201 kb on + strand at 295.209 kb on - strand at 295.309 kb on + strand at 295.345 kb on + strand, within Dsui_0295 at 295.350 kb on + strand, within Dsui_0295 at 295.381 kb on - strand at 295.418 kb on - strand at 295.455 kb on - strand at 295.472 kb on - strand, within Dsui_0295 at 295.472 kb on - strand, within Dsui_0295 at 295.581 kb on - strand at 295.731 kb on + strand at 295.739 kb on - strand, within Dsui_0295 at 295.776 kb on + strand, within Dsui_0295 at 295.826 kb on - strand at 295.869 kb on - strand, within Dsui_0295 at 295.885 kb on + strand, within Dsui_0295 at 295.913 kb on - strand at 295.987 kb on - strand, within Dsui_0295 at 295.992 kb on + strand at 296.010 kb on - strand at 296.087 kb on - strand at 296.473 kb on - strand, within Dsui_0295 at 296.896 kb on + strand at 296.898 kb on - strand, within Dsui_0295 at 297.308 kb on + strand at 297.400 kb on - strand at 297.480 kb on + strand at 297.516 kb on + strand at 297.618 kb on - strand at 297.767 kb on + strand at 297.801 kb on + strand at 297.868 kb on - strand at 297.879 kb on + strand, within Dsui_0296 at 298.136 kb on - strand at 298.141 kb on - strand, within Dsui_0296 at 298.146 kb on - strand, within Dsui_0296 at 298.416 kb on - strand at 298.452 kb on + strand at 298.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM remove 293,974 + +0.6 294,021 + Dsui_0294 0.40 -1.4 294,043 + +0.6 294,053 + Dsui_0294 0.43 -1.4 294,200 - +0.6 294,268 - Dsui_0294 0.57 -0.4 294,324 + Dsui_0294 0.61 -2.0 294,332 - -0.4 294,339 + Dsui_0294 0.62 -1.0 294,512 + Dsui_0294 0.73 -1.2 294,514 + Dsui_0294 0.73 -0.4 294,557 + Dsui_0294 0.76 -0.4 294,577 - Dsui_0294 0.77 +0.6 294,599 + Dsui_0294 0.79 -1.7 294,619 + Dsui_0294 0.80 -1.6 294,719 + Dsui_0294 0.87 -1.7 294,727 - +0.6 295,053 + -2.0 295,079 + -0.7 295,112 + -2.0 295,120 - +0.6 295,122 + +0.6 295,144 - -1.0 295,154 - +0.6 295,177 + +0.6 295,190 + -1.4 295,201 + +0.6 295,209 - +0.6 295,309 + +0.6 295,345 + Dsui_0295 0.15 -1.0 295,350 + Dsui_0295 0.15 +0.6 295,381 - -1.0 295,418 - +0.6 295,455 - -0.4 295,472 - Dsui_0295 0.19 -0.4 295,472 - Dsui_0295 0.19 +0.6 295,581 - +0.6 295,731 + +0.6 295,739 - Dsui_0295 0.29 -1.0 295,776 + Dsui_0295 0.30 -2.4 295,826 - -1.4 295,869 - Dsui_0295 0.33 -0.4 295,885 + Dsui_0295 0.34 -2.0 295,913 - +0.6 295,987 - Dsui_0295 0.38 -2.6 295,992 + -0.4 296,010 - -0.4 296,087 - +0.6 296,473 - Dsui_0295 0.55 -2.2 296,896 + -0.4 296,898 - Dsui_0295 0.70 -0.7 297,308 + +0.6 297,400 - -0.4 297,480 + +0.6 297,516 + +0.6 297,618 - -0.4 297,767 + -0.4 297,801 + -1.0 297,868 - -0.4 297,879 + Dsui_0296 0.20 -2.0 298,136 - -0.4 298,141 - Dsui_0296 0.53 -1.7 298,146 - Dsui_0296 0.54 -0.4 298,416 - +0.6 298,452 + -1.7 298,517 + -1.7
Or see this region's nucleotide sequence