Strain Fitness in Dechlorosoma suillum PS around Dsui_0181

Experiment: ALP with Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0178 and Dsui_0179 are separated by 15 nucleotidesDsui_0179 and Dsui_0180 are separated by 1 nucleotidesDsui_0180 and Dsui_0181 are separated by 180 nucleotidesDsui_0181 and Dsui_0182 are separated by 393 nucleotides Dsui_0178: Dsui_0178 - hypothetical protein, at 181,670 to 182,509 _0178 Dsui_0179: Dsui_0179 - hypothetical protein, at 182,525 to 182,614 _0179 Dsui_0180: Dsui_0180 - hypothetical protein, at 182,616 to 182,885 _0180 Dsui_0181: Dsui_0181 - hypothetical protein, at 183,066 to 183,296 _0181 Dsui_0182: Dsui_0182 - hypothetical protein, at 183,690 to 184,331 _0182 Position (kb) 183 184Strain fitness (log2 ratio) -2 -1 0 1at 182.114 kb on + strand, within Dsui_0178at 182.191 kb on + strand, within Dsui_0178at 182.191 kb on + strand, within Dsui_0178at 182.280 kb on + strand, within Dsui_0178at 182.546 kb on + strand, within Dsui_0179at 182.546 kb on + strand, within Dsui_0179at 182.681 kb on + strand, within Dsui_0180at 182.681 kb on + strand, within Dsui_0180at 182.708 kb on - strand, within Dsui_0180at 182.756 kb on - strand, within Dsui_0180at 182.764 kb on - strand, within Dsui_0180at 183.045 kb on + strandat 183.089 kb on - strand, within Dsui_0181at 183.210 kb on + strand, within Dsui_0181at 183.315 kb on + strandat 183.336 kb on + strandat 183.344 kb on - strandat 183.428 kb on - strandat 183.501 kb on + strandat 183.540 kb on + strandat 183.545 kb on + strandat 183.590 kb on - strandat 183.619 kb on - strandat 183.622 kb on + strandat 183.634 kb on + strandat 183.743 kb on - strandat 183.743 kb on - strandat 183.762 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.773 kb on - strand, within Dsui_0182at 183.786 kb on + strand, within Dsui_0182at 183.848 kb on - strand, within Dsui_0182at 183.861 kb on + strand, within Dsui_0182at 183.863 kb on + strand, within Dsui_0182at 183.936 kb on + strand, within Dsui_0182at 183.947 kb on - strand, within Dsui_0182at 183.994 kb on + strand, within Dsui_0182at 183.997 kb on - strand, within Dsui_0182at 184.014 kb on + strand, within Dsui_0182at 184.022 kb on - strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.075 kb on - strand, within Dsui_0182at 184.108 kb on - strand, within Dsui_0182at 184.145 kb on + strand, within Dsui_0182at 184.179 kb on - strand, within Dsui_0182

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
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182,114 + Dsui_0178 0.53 -1.4
182,191 + Dsui_0178 0.62 +0.6
182,191 + Dsui_0178 0.62 +0.6
182,280 + Dsui_0178 0.73 -0.4
182,546 + Dsui_0179 0.23 -1.0
182,546 + Dsui_0179 0.23 -0.4
182,681 + Dsui_0180 0.24 +0.6
182,681 + Dsui_0180 0.24 -1.0
182,708 - Dsui_0180 0.34 +0.6
182,756 - Dsui_0180 0.52 -1.7
182,764 - Dsui_0180 0.55 +0.6
183,045 + +0.6
183,089 - Dsui_0181 0.10 -0.4
183,210 + Dsui_0181 0.62 +0.6
183,315 + -0.4
183,336 + +0.6
183,344 - -0.5
183,428 - -0.6
183,501 + -2.4
183,540 + -1.4
183,545 + +0.6
183,590 - -1.4
183,619 - -0.4
183,622 + -0.4
183,634 + -1.0
183,743 - -1.0
183,743 - -0.8
183,762 - Dsui_0182 0.11 -0.9
183,768 - Dsui_0182 0.12 -0.2
183,768 - Dsui_0182 0.12 -0.6
183,773 - Dsui_0182 0.13 -0.7
183,786 + Dsui_0182 0.15 -1.7
183,848 - Dsui_0182 0.25 -0.4
183,861 + Dsui_0182 0.27 +0.6
183,863 + Dsui_0182 0.27 +0.6
183,936 + Dsui_0182 0.38 -1.0
183,947 - Dsui_0182 0.40 -0.4
183,994 + Dsui_0182 0.47 -0.4
183,997 - Dsui_0182 0.48 -1.0
184,014 + Dsui_0182 0.50 -0.4
184,022 - Dsui_0182 0.52 -0.4
184,066 + Dsui_0182 0.59 +0.6
184,066 + Dsui_0182 0.59 -2.4
184,067 + Dsui_0182 0.59 -2.7
184,067 + Dsui_0182 0.59 -1.4
184,075 - Dsui_0182 0.60 -0.4
184,108 - Dsui_0182 0.65 -0.6
184,145 + Dsui_0182 0.71 -1.4
184,179 - Dsui_0182 0.76 -0.9

Or see this region's nucleotide sequence