Strain Fitness in Dechlorosoma suillum PS around Dsui_0040

Experiment: ALP with Nickel (II) chloride 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0039 and Dsui_0040 are separated by 185 nucleotidesDsui_0040 and Dsui_0041 are separated by 38 nucleotides Dsui_0039: Dsui_0039 - dimethyladenosine transferase, at 35,439 to 36,215 _0039 Dsui_0040: Dsui_0040 - FAD-dependent dehydrogenase, at 36,401 to 38,029 _0040 Dsui_0041: Dsui_0041 - hypothetical protein, at 38,068 to 39,075 _0041 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1at 35.413 kb on - strandat 35.466 kb on + strandat 35.554 kb on + strand, within Dsui_0039at 35.714 kb on + strand, within Dsui_0039at 35.794 kb on + strand, within Dsui_0039at 35.802 kb on + strand, within Dsui_0039at 35.971 kb on + strand, within Dsui_0039at 36.088 kb on + strand, within Dsui_0039at 36.096 kb on - strandat 36.186 kb on + strandat 36.193 kb on - strandat 36.354 kb on + strandat 36.377 kb on + strandat 36.385 kb on - strandat 36.391 kb on + strandat 36.427 kb on + strandat 36.436 kb on - strandat 36.436 kb on - strandat 36.449 kb on + strandat 36.449 kb on + strandat 36.457 kb on - strandat 36.486 kb on - strandat 36.502 kb on + strandat 36.510 kb on - strandat 36.525 kb on + strandat 36.533 kb on - strandat 36.533 kb on - strandat 36.693 kb on + strand, within Dsui_0040at 36.708 kb on + strand, within Dsui_0040at 36.754 kb on - strand, within Dsui_0040at 36.789 kb on - strand, within Dsui_0040at 36.808 kb on + strand, within Dsui_0040at 36.821 kb on - strand, within Dsui_0040at 36.826 kb on + strand, within Dsui_0040at 36.826 kb on - strand, within Dsui_0040at 36.921 kb on - strand, within Dsui_0040at 37.014 kb on + strand, within Dsui_0040at 37.048 kb on + strand, within Dsui_0040at 37.048 kb on + strand, within Dsui_0040at 37.056 kb on - strand, within Dsui_0040at 37.133 kb on + strand, within Dsui_0040at 37.195 kb on + strand, within Dsui_0040at 37.229 kb on - strand, within Dsui_0040at 37.232 kb on - strand, within Dsui_0040at 37.304 kb on - strand, within Dsui_0040at 37.562 kb on + strand, within Dsui_0040at 37.680 kb on - strand, within Dsui_0040at 37.694 kb on + strand, within Dsui_0040at 37.704 kb on + strand, within Dsui_0040at 37.715 kb on + strand, within Dsui_0040at 37.787 kb on + strand, within Dsui_0040at 37.860 kb on + strand, within Dsui_0040at 37.863 kb on - strand, within Dsui_0040at 38.066 kb on + strandat 38.078 kb on - strandat 38.135 kb on - strandat 38.146 kb on + strandat 38.206 kb on - strandat 38.229 kb on - strandat 38.347 kb on - strand, within Dsui_0041at 38.452 kb on - strandat 38.459 kb on - strandat 38.466 kb on + strand, within Dsui_0041at 38.510 kb on + strand, within Dsui_0041at 38.518 kb on - strand, within Dsui_0041at 38.640 kb on - strand, within Dsui_0041at 38.686 kb on + strand, within Dsui_0041at 38.692 kb on + strand, within Dsui_0041at 38.819 kb on + strand, within Dsui_0041at 38.871 kb on - strandat 38.895 kb on + strand, within Dsui_0041at 38.895 kb on + strand, within Dsui_0041at 38.903 kb on - strand, within Dsui_0041at 38.950 kb on + strand, within Dsui_0041at 39.023 kb on - strandat 39.026 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 1.5 mM
remove
35,413 - -0.4
35,466 + -2.2
35,554 + Dsui_0039 0.15 -1.5
35,714 + Dsui_0039 0.35 -2.8
35,794 + Dsui_0039 0.46 -2.1
35,802 + Dsui_0039 0.47 -2.6
35,971 + Dsui_0039 0.68 -1.3
36,088 + Dsui_0039 0.84 -1.5
36,096 - -0.4
36,186 + -0.6
36,193 - -1.0
36,354 + -0.7
36,377 + -1.1
36,385 - -1.0
36,391 + -1.6
36,427 + -0.7
36,436 - -1.4
36,436 - -2.4
36,449 + -0.9
36,449 + -1.1
36,457 - -1.0
36,486 - +0.6
36,502 + -0.9
36,510 - -1.4
36,525 + -0.8
36,533 - +0.0
36,533 - -0.4
36,693 + Dsui_0040 0.18 -2.2
36,708 + Dsui_0040 0.19 -1.0
36,754 - Dsui_0040 0.22 +0.6
36,789 - Dsui_0040 0.24 -0.4
36,808 + Dsui_0040 0.25 -1.2
36,821 - Dsui_0040 0.26 +0.6
36,826 + Dsui_0040 0.26 -2.0
36,826 - Dsui_0040 0.26 +0.6
36,921 - Dsui_0040 0.32 +0.6
37,014 + Dsui_0040 0.38 -1.1
37,048 + Dsui_0040 0.40 -1.1
37,048 + Dsui_0040 0.40 -1.0
37,056 - Dsui_0040 0.40 -2.5
37,133 + Dsui_0040 0.45 -1.0
37,195 + Dsui_0040 0.49 -1.1
37,229 - Dsui_0040 0.51 -1.7
37,232 - Dsui_0040 0.51 +0.6
37,304 - Dsui_0040 0.55 +0.6
37,562 + Dsui_0040 0.71 -0.6
37,680 - Dsui_0040 0.79 -1.4
37,694 + Dsui_0040 0.79 -1.3
37,704 + Dsui_0040 0.80 -1.1
37,715 + Dsui_0040 0.81 -1.0
37,787 + Dsui_0040 0.85 -1.0
37,860 + Dsui_0040 0.90 -1.7
37,863 - Dsui_0040 0.90 +0.6
38,066 + -0.8
38,078 - -0.4
38,135 - -1.4
38,146 + -1.1
38,206 - +0.6
38,229 - +0.6
38,347 - Dsui_0041 0.28 -1.7
38,452 - -0.4
38,459 - +0.6
38,466 + Dsui_0041 0.39 -0.6
38,510 + Dsui_0041 0.44 -1.9
38,518 - Dsui_0041 0.45 -0.4
38,640 - Dsui_0041 0.57 +0.6
38,686 + Dsui_0041 0.61 -1.2
38,692 + Dsui_0041 0.62 -1.3
38,819 + Dsui_0041 0.75 -1.2
38,871 - +0.6
38,895 + Dsui_0041 0.82 -0.9
38,895 + Dsui_0041 0.82 +0.8
38,903 - Dsui_0041 0.83 -1.0
38,950 + Dsui_0041 0.88 -0.2
39,023 - -2.0
39,026 + -1.8

Or see this region's nucleotide sequence