Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10525

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10520 and BWI76_RS10525 are separated by 109 nucleotidesBWI76_RS10525 and BWI76_RS10530 are separated by 143 nucleotidesBWI76_RS10530 and BWI76_RS10535 overlap by 1 nucleotides BWI76_RS10520: BWI76_RS10520 - guanine deaminase, at 2,222,393 to 2,223,712 _RS10520 BWI76_RS10525: BWI76_RS10525 - cytosine/purines uracil thiamine allantoin permease, at 2,223,822 to 2,225,309 _RS10525 BWI76_RS10530: BWI76_RS10530 - GntR family transcriptional regulator with, at 2,225,453 to 2,226,169 _RS10530 BWI76_RS10535: BWI76_RS10535 - Asp/Glu/hydantoin racemase, at 2,226,169 to 2,226,912 _RS10535 Position (kb) 2223 2224 2225 2226Strain fitness (log2 ratio) -1 0 1at 2222.874 kb on + strand, within BWI76_RS10520at 2222.973 kb on + strand, within BWI76_RS10520at 2223.258 kb on + strand, within BWI76_RS10520at 2223.411 kb on - strand, within BWI76_RS10520at 2223.419 kb on - strand, within BWI76_RS10520at 2223.564 kb on + strand, within BWI76_RS10520at 2223.661 kb on - strandat 2223.998 kb on - strand, within BWI76_RS10525at 2224.400 kb on + strand, within BWI76_RS10525at 2224.465 kb on - strand, within BWI76_RS10525at 2224.654 kb on - strand, within BWI76_RS10525at 2224.798 kb on - strand, within BWI76_RS10525at 2225.061 kb on - strand, within BWI76_RS10525at 2225.061 kb on - strand, within BWI76_RS10525at 2225.151 kb on - strand, within BWI76_RS10525at 2225.283 kb on - strandat 2225.358 kb on - strandat 2225.716 kb on - strand, within BWI76_RS10530at 2225.939 kb on + strand, within BWI76_RS10530

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,222,874 + BWI76_RS10520 0.36 +1.0
2,222,973 + BWI76_RS10520 0.44 +0.2
2,223,258 + BWI76_RS10520 0.66 +0.6
2,223,411 - BWI76_RS10520 0.77 -0.8
2,223,419 - BWI76_RS10520 0.78 +0.3
2,223,564 + BWI76_RS10520 0.89 +0.4
2,223,661 - +0.4
2,223,998 - BWI76_RS10525 0.12 -0.0
2,224,400 + BWI76_RS10525 0.39 -0.2
2,224,465 - BWI76_RS10525 0.43 -0.1
2,224,654 - BWI76_RS10525 0.56 -0.9
2,224,798 - BWI76_RS10525 0.66 -1.1
2,225,061 - BWI76_RS10525 0.83 -0.2
2,225,061 - BWI76_RS10525 0.83 -0.2
2,225,151 - BWI76_RS10525 0.89 -0.4
2,225,283 - -0.8
2,225,358 - -0.4
2,225,716 - BWI76_RS10530 0.37 +0.1
2,225,939 + BWI76_RS10530 0.68 -0.1

Or see this region's nucleotide sequence