Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02200

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02195 and AO353_02200 are separated by 264 nucleotidesAO353_02200 and AO353_02205 are separated by 88 nucleotidesAO353_02205 and AO353_02210 are separated by 241 nucleotides AO353_02195: AO353_02195 - spermidine synthase, at 471,965 to 472,840 _02195 AO353_02200: AO353_02200 - hypothetical protein, at 473,105 to 473,296 _02200 AO353_02205: AO353_02205 - hypothetical protein, at 473,385 to 473,915 _02205 AO353_02210: AO353_02210 - hypothetical protein, at 474,157 to 474,675 _02210 Position (kb) 473 474Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 472.158 kb on + strand, within AO353_02195at 472.158 kb on + strand, within AO353_02195at 472.158 kb on + strand, within AO353_02195at 472.158 kb on + strand, within AO353_02195at 472.158 kb on + strand, within AO353_02195at 472.158 kb on + strand, within AO353_02195at 472.158 kb on + strand, within AO353_02195at 472.180 kb on - strand, within AO353_02195at 472.276 kb on + strand, within AO353_02195at 472.311 kb on + strand, within AO353_02195at 472.312 kb on - strand, within AO353_02195at 472.647 kb on + strand, within AO353_02195at 472.647 kb on + strand, within AO353_02195at 472.648 kb on - strand, within AO353_02195at 472.648 kb on - strand, within AO353_02195at 472.648 kb on - strand, within AO353_02195at 472.816 kb on - strandat 472.944 kb on + strandat 472.944 kb on + strandat 472.944 kb on + strandat 472.945 kb on - strandat 472.945 kb on - strandat 472.990 kb on + strandat 472.990 kb on + strandat 472.990 kb on + strandat 472.991 kb on - strandat 473.000 kb on + strandat 473.084 kb on + strandat 473.084 kb on + strandat 473.107 kb on - strandat 473.107 kb on - strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.114 kb on + strandat 473.115 kb on - strandat 473.115 kb on - strandat 473.115 kb on - strandat 473.115 kb on - strandat 473.115 kb on - strandat 473.115 kb on - strandat 473.115 kb on - strandat 473.115 kb on - strandat 473.146 kb on + strand, within AO353_02200at 473.146 kb on + strand, within AO353_02200at 473.146 kb on + strand, within AO353_02200at 473.147 kb on - strand, within AO353_02200at 473.221 kb on + strand, within AO353_02200at 473.221 kb on + strand, within AO353_02200at 473.221 kb on + strand, within AO353_02200at 473.221 kb on + strand, within AO353_02200at 473.222 kb on - strand, within AO353_02200at 473.222 kb on - strand, within AO353_02200at 473.222 kb on - strand, within AO353_02200at 473.222 kb on - strand, within AO353_02200at 473.245 kb on + strand, within AO353_02200at 473.246 kb on - strand, within AO353_02200at 473.360 kb on + strandat 473.361 kb on - strandat 473.363 kb on + strandat 473.387 kb on - strandat 473.482 kb on + strand, within AO353_02205at 473.483 kb on - strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.689 kb on + strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.690 kb on - strand, within AO353_02205at 473.733 kb on + strand, within AO353_02205at 473.734 kb on - strand, within AO353_02205at 473.773 kb on + strand, within AO353_02205at 473.773 kb on + strand, within AO353_02205at 473.774 kb on - strand, within AO353_02205at 473.774 kb on - strand, within AO353_02205at 473.818 kb on + strand, within AO353_02205at 473.818 kb on + strand, within AO353_02205at 473.818 kb on + strand, within AO353_02205at 473.819 kb on - strand, within AO353_02205at 474.057 kb on + strandat 474.076 kb on + strandat 474.076 kb on + strandat 474.076 kb on + strandat 474.077 kb on - strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.084 kb on - strandat 474.084 kb on - strandat 474.084 kb on - strandat 474.278 kb on + strand, within AO353_02210at 474.279 kb on - strand, within AO353_02210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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472,158 + AO353_02195 0.22 +0.5
472,158 + AO353_02195 0.22 +0.4
472,158 + AO353_02195 0.22 -0.6
472,158 + AO353_02195 0.22 -0.4
472,158 + AO353_02195 0.22 -1.2
472,158 + AO353_02195 0.22 -1.4
472,158 + AO353_02195 0.22 -0.6
472,180 - AO353_02195 0.25 -2.1
472,276 + AO353_02195 0.36 -2.0
472,311 + AO353_02195 0.39 -1.0
472,312 - AO353_02195 0.40 -0.9
472,647 + AO353_02195 0.78 -0.2
472,647 + AO353_02195 0.78 +0.9
472,648 - AO353_02195 0.78 +0.3
472,648 - AO353_02195 0.78 -0.4
472,648 - AO353_02195 0.78 -0.2
472,816 - -0.7
472,944 + -0.8
472,944 + -2.9
472,944 + +0.9
472,945 - +0.6
472,945 - +1.2
472,990 + +0.1
472,990 + -0.1
472,990 + +0.8
472,991 - +1.5
473,000 + -1.9
473,084 + +0.2
473,084 + -0.1
473,107 - -0.7
473,107 - -0.9
473,114 + -0.3
473,114 + -1.3
473,114 + -1.0
473,114 + -1.1
473,114 + +0.4
473,114 + -0.1
473,114 + -1.1
473,114 + -1.0
473,114 + -0.4
473,115 - -0.1
473,115 - -1.0
473,115 - +0.6
473,115 - -1.2
473,115 - +0.1
473,115 - +0.3
473,115 - -1.1
473,115 - +0.1
473,146 + AO353_02200 0.21 -0.1
473,146 + AO353_02200 0.21 -1.4
473,146 + AO353_02200 0.21 +1.5
473,147 - AO353_02200 0.22 -0.2
473,221 + AO353_02200 0.60 -0.0
473,221 + AO353_02200 0.60 -1.6
473,221 + AO353_02200 0.60 +1.3
473,221 + AO353_02200 0.60 -0.1
473,222 - AO353_02200 0.61 -1.3
473,222 - AO353_02200 0.61 -0.6
473,222 - AO353_02200 0.61 -1.5
473,222 - AO353_02200 0.61 +0.6
473,245 + AO353_02200 0.73 -1.1
473,246 - AO353_02200 0.73 +0.1
473,360 + +1.3
473,361 - -0.9
473,363 + +0.1
473,387 - -0.7
473,482 + AO353_02205 0.18 +0.3
473,483 - AO353_02205 0.18 -0.1
473,689 + AO353_02205 0.57 +1.3
473,689 + AO353_02205 0.57 +0.5
473,689 + AO353_02205 0.57 +0.1
473,689 + AO353_02205 0.57 -0.7
473,689 + AO353_02205 0.57 +0.6
473,689 + AO353_02205 0.57 +1.5
473,689 + AO353_02205 0.57 -0.7
473,689 + AO353_02205 0.57 -1.3
473,689 + AO353_02205 0.57 +1.8
473,689 + AO353_02205 0.57 -0.2
473,690 - AO353_02205 0.57 -1.7
473,690 - AO353_02205 0.57 +0.8
473,690 - AO353_02205 0.57 -0.0
473,690 - AO353_02205 0.57 -0.9
473,690 - AO353_02205 0.57 -0.1
473,690 - AO353_02205 0.57 -0.2
473,690 - AO353_02205 0.57 -0.1
473,690 - AO353_02205 0.57 -1.6
473,690 - AO353_02205 0.57 +0.3
473,690 - AO353_02205 0.57 +1.0
473,733 + AO353_02205 0.66 -0.6
473,734 - AO353_02205 0.66 +0.7
473,773 + AO353_02205 0.73 +0.3
473,773 + AO353_02205 0.73 +0.2
473,774 - AO353_02205 0.73 +0.9
473,774 - AO353_02205 0.73 +0.8
473,818 + AO353_02205 0.82 +0.9
473,818 + AO353_02205 0.82 +0.1
473,818 + AO353_02205 0.82 +0.4
473,819 - AO353_02205 0.82 -0.0
474,057 + +1.6
474,076 + -0.5
474,076 + -1.2
474,076 + +0.1
474,077 - -0.1
474,083 + -1.6
474,083 + +0.6
474,083 + +0.4
474,083 + +0.0
474,083 + -1.8
474,084 - +0.3
474,084 - -1.0
474,084 - -0.1
474,278 + AO353_02210 0.23 +1.1
474,279 - AO353_02210 0.24 -0.6

Or see this region's nucleotide sequence