Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01110 and AO353_01115 are separated by 178 nucleotides AO353_01115 and AO353_01120 are separated by 306 nucleotides
AO353_01110: AO353_01110 - inducer of phenazine B, at 243,943 to 246,135
_01110
AO353_01115: AO353_01115 - inducer of phenazine A, at 246,314 to 247,318
_01115
AO353_01120: AO353_01120 - GntR family transcriptional regulator, at 247,625 to 249,073
_01120
Position (kb) 246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.321 kb on - strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.336 kb on + strand, within AO353_01110 at 245.571 kb on + strand, within AO353_01110 at 245.572 kb on - strand, within AO353_01110 at 245.572 kb on - strand, within AO353_01110 at 245.572 kb on - strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.671 kb on + strand, within AO353_01110 at 245.672 kb on - strand, within AO353_01110 at 245.672 kb on - strand, within AO353_01110 at 245.711 kb on + strand, within AO353_01110 at 245.711 kb on + strand, within AO353_01110 at 245.711 kb on + strand, within AO353_01110 at 245.897 kb on + strand, within AO353_01110 at 245.898 kb on - strand, within AO353_01110 at 245.898 kb on - strand, within AO353_01110 at 245.965 kb on - strand at 245.966 kb on + strand at 245.967 kb on - strand at 245.967 kb on - strand at 245.967 kb on - strand at 246.077 kb on + strand at 246.077 kb on + strand at 246.077 kb on + strand at 246.078 kb on - strand at 246.078 kb on - strand at 246.078 kb on - strand at 246.078 kb on - strand at 246.205 kb on + strand at 246.206 kb on - strand at 246.208 kb on + strand at 246.208 kb on + strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.209 kb on - strand at 246.231 kb on + strand at 246.231 kb on + strand at 246.232 kb on - strand at 246.262 kb on + strand at 246.263 kb on - strand at 246.263 kb on - strand at 246.315 kb on + strand at 246.315 kb on + strand at 246.486 kb on + strand, within AO353_01115 at 246.486 kb on + strand, within AO353_01115 at 246.487 kb on - strand, within AO353_01115 at 246.487 kb on - strand, within AO353_01115 at 246.514 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.522 kb on + strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 246.523 kb on - strand, within AO353_01115 at 247.079 kb on + strand, within AO353_01115 at 247.084 kb on + strand, within AO353_01115 at 247.085 kb on - strand, within AO353_01115 at 247.085 kb on - strand, within AO353_01115 at 247.085 kb on - strand, within AO353_01115 at 247.140 kb on + strand, within AO353_01115 at 247.140 kb on + strand, within AO353_01115 at 247.224 kb on + strand at 247.224 kb on + strand at 247.224 kb on + strand at 247.224 kb on + strand at 247.225 kb on - strand at 247.225 kb on - strand at 247.225 kb on - strand at 247.225 kb on - strand at 247.233 kb on + strand at 247.233 kb on + strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.234 kb on - strand at 247.278 kb on + strand at 247.279 kb on - strand at 247.279 kb on - strand at 247.279 kb on - strand at 247.279 kb on - strand at 247.368 kb on + strand at 247.369 kb on - strand at 247.369 kb on - strand at 247.369 kb on - strand at 247.442 kb on + strand at 247.443 kb on - strand at 247.451 kb on + strand at 247.480 kb on + strand at 247.480 kb on + strand at 247.480 kb on + strand at 247.480 kb on + strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.481 kb on - strand at 247.503 kb on + strand at 247.503 kb on + strand at 247.504 kb on - strand at 247.504 kb on - strand at 247.537 kb on - strand at 247.593 kb on + strand at 247.594 kb on - strand at 247.598 kb on + strand at 247.599 kb on - strand at 247.612 kb on + strand at 247.635 kb on - strand at 247.714 kb on + strand at 247.719 kb on + strand at 247.770 kb on + strand, within AO353_01120 at 247.770 kb on + strand, within AO353_01120 at 247.770 kb on + strand, within AO353_01120 at 247.771 kb on - strand, within AO353_01120 at 247.771 kb on - strand, within AO353_01120 at 247.814 kb on + strand, within AO353_01120 at 247.815 kb on - strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.048 kb on + strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.049 kb on - strand, within AO353_01120 at 248.229 kb on - strand, within AO353_01120 at 248.229 kb on - strand, within AO353_01120 at 248.229 kb on - strand, within AO353_01120
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 245,321 - AO353_01110 0.63 -0.4 245,336 + AO353_01110 0.64 +0.4 245,336 + AO353_01110 0.64 -1.2 245,336 + AO353_01110 0.64 +1.1 245,336 + AO353_01110 0.64 -0.4 245,336 + AO353_01110 0.64 +1.3 245,571 + AO353_01110 0.74 -1.4 245,572 - AO353_01110 0.74 -0.1 245,572 - AO353_01110 0.74 +0.3 245,572 - AO353_01110 0.74 -0.5 245,671 + AO353_01110 0.79 -1.8 245,671 + AO353_01110 0.79 +1.3 245,671 + AO353_01110 0.79 -0.6 245,671 + AO353_01110 0.79 -0.4 245,672 - AO353_01110 0.79 -0.8 245,672 - AO353_01110 0.79 -0.8 245,711 + AO353_01110 0.81 -0.1 245,711 + AO353_01110 0.81 -0.9 245,711 + AO353_01110 0.81 +0.1 245,897 + AO353_01110 0.89 +0.6 245,898 - AO353_01110 0.89 -0.4 245,898 - AO353_01110 0.89 -0.9 245,965 - +1.3 245,966 + +0.9 245,967 - -0.5 245,967 - -0.4 245,967 - -1.7 246,077 + -0.8 246,077 + +0.6 246,077 + +0.4 246,078 - -0.6 246,078 - -0.3 246,078 - +0.9 246,078 - +0.3 246,205 + -1.3 246,206 - -1.1 246,208 + -1.0 246,208 + -0.5 246,209 - -1.7 246,209 - -0.9 246,209 - -0.5 246,209 - +0.1 246,209 - -1.3 246,231 + +0.6 246,231 + -1.4 246,232 - +0.7 246,262 + -0.4 246,263 - +1.5 246,263 - -1.6 246,315 + -0.1 246,315 + -1.4 246,486 + AO353_01115 0.17 -1.9 246,486 + AO353_01115 0.17 -1.8 246,487 - AO353_01115 0.17 -0.9 246,487 - AO353_01115 0.17 -1.0 246,514 + AO353_01115 0.20 +0.1 246,522 + AO353_01115 0.21 -0.2 246,522 + AO353_01115 0.21 -1.8 246,522 + AO353_01115 0.21 -0.8 246,522 + AO353_01115 0.21 -1.0 246,522 + AO353_01115 0.21 -0.4 246,522 + AO353_01115 0.21 +0.5 246,522 + AO353_01115 0.21 +1.9 246,522 + AO353_01115 0.21 -0.0 246,522 + AO353_01115 0.21 -0.2 246,522 + AO353_01115 0.21 -0.4 246,522 + AO353_01115 0.21 -0.3 246,522 + AO353_01115 0.21 -0.8 246,523 - AO353_01115 0.21 -0.5 246,523 - AO353_01115 0.21 -0.9 246,523 - AO353_01115 0.21 -0.3 246,523 - AO353_01115 0.21 +0.6 246,523 - AO353_01115 0.21 +0.3 246,523 - AO353_01115 0.21 -0.6 246,523 - AO353_01115 0.21 -0.3 246,523 - AO353_01115 0.21 -2.1 246,523 - AO353_01115 0.21 -0.9 247,079 + AO353_01115 0.76 -1.4 247,084 + AO353_01115 0.77 -0.2 247,085 - AO353_01115 0.77 +1.3 247,085 - AO353_01115 0.77 -0.5 247,085 - AO353_01115 0.77 +0.6 247,140 + AO353_01115 0.82 -0.6 247,140 + AO353_01115 0.82 -1.0 247,224 + +0.9 247,224 + +1.6 247,224 + -0.8 247,224 + -0.7 247,225 - -0.2 247,225 - +1.1 247,225 - +0.4 247,225 - +0.3 247,233 + +0.9 247,233 + -1.4 247,234 - +2.1 247,234 - -0.4 247,234 - +0.8 247,234 - -0.9 247,234 - +0.4 247,278 + -1.5 247,279 - -0.4 247,279 - -0.2 247,279 - -0.4 247,279 - -0.3 247,368 + -0.0 247,369 - -0.6 247,369 - +0.1 247,369 - +0.1 247,442 + -0.8 247,443 - -0.4 247,451 + +0.7 247,480 + +0.4 247,480 + -0.3 247,480 + -1.1 247,480 + +1.6 247,481 - -0.2 247,481 - +0.1 247,481 - +1.0 247,481 - +1.0 247,481 - -0.9 247,481 - -1.0 247,503 + -1.3 247,503 + -1.4 247,504 - -1.2 247,504 - -0.4 247,537 - -0.5 247,593 + -1.0 247,594 - +0.1 247,598 + +0.1 247,599 - -0.5 247,612 + -2.0 247,635 - +1.7 247,714 + -0.9 247,719 + -0.6 247,770 + AO353_01120 0.10 -1.1 247,770 + AO353_01120 0.10 -0.6 247,770 + AO353_01120 0.10 +1.0 247,771 - AO353_01120 0.10 -0.8 247,771 - AO353_01120 0.10 +0.4 247,814 + AO353_01120 0.13 -1.4 247,815 - AO353_01120 0.13 -0.4 248,048 + AO353_01120 0.29 -1.4 248,048 + AO353_01120 0.29 +0.1 248,048 + AO353_01120 0.29 +0.1 248,048 + AO353_01120 0.29 -0.8 248,048 + AO353_01120 0.29 +0.6 248,049 - AO353_01120 0.29 -0.1 248,049 - AO353_01120 0.29 +1.9 248,049 - AO353_01120 0.29 +1.0 248,049 - AO353_01120 0.29 -1.0 248,229 - AO353_01120 0.42 -0.8 248,229 - AO353_01120 0.42 +0.4 248,229 - AO353_01120 0.42 -0.7
Or see this region's nucleotide sequence