Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00230

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00225 and AO353_00230 overlap by 89 nucleotidesAO353_00230 and AO353_00235 are separated by 65 nucleotidesAO353_00235 and AO353_00240 are separated by 42 nucleotidesAO353_00240 and AO353_00245 are separated by 141 nucleotides AO353_00225: AO353_00225 - terminase, at 41,662 to 43,713 _00225 AO353_00230: AO353_00230 - terminase, at 43,625 to 44,503 _00230 AO353_00235: AO353_00235 - transcriptional regulator, at 44,569 to 44,826 _00235 AO353_00240: AO353_00240 - hypothetical protein, at 44,869 to 45,048 _00240 AO353_00245: AO353_00245 - XRE family transcriptional regulator, at 45,190 to 45,537 _00245 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 42.658 kb on + strand, within AO353_00225at 42.658 kb on + strand, within AO353_00225at 42.659 kb on - strand, within AO353_00225at 42.799 kb on + strand, within AO353_00225at 42.799 kb on + strand, within AO353_00225at 42.800 kb on - strand, within AO353_00225at 42.860 kb on - strand, within AO353_00225at 42.860 kb on - strand, within AO353_00225at 42.860 kb on - strand, within AO353_00225at 42.887 kb on - strand, within AO353_00225at 43.055 kb on - strand, within AO353_00225at 43.162 kb on + strand, within AO353_00225at 43.187 kb on - strand, within AO353_00225at 43.333 kb on + strand, within AO353_00225at 43.333 kb on + strand, within AO353_00225at 43.333 kb on + strand, within AO353_00225at 43.334 kb on - strand, within AO353_00225at 43.334 kb on - strand, within AO353_00225at 43.334 kb on - strand, within AO353_00225at 43.334 kb on - strand, within AO353_00225at 43.503 kb on + strand, within AO353_00225at 43.503 kb on + strand, within AO353_00225at 43.503 kb on + strand, within AO353_00225at 43.503 kb on + strand, within AO353_00225at 43.503 kb on + strand, within AO353_00225at 43.503 kb on + strand, within AO353_00225at 43.504 kb on - strand, within AO353_00225at 43.504 kb on - strand, within AO353_00225at 43.504 kb on - strand, within AO353_00225at 43.577 kb on + strandat 43.577 kb on + strandat 43.577 kb on + strandat 43.577 kb on + strandat 43.577 kb on + strandat 43.578 kb on - strandat 43.613 kb on + strandat 43.613 kb on + strandat 43.613 kb on + strandat 43.613 kb on + strandat 43.614 kb on - strandat 43.614 kb on - strandat 43.614 kb on - strandat 43.614 kb on - strandat 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.949 kb on + strand, within AO353_00230at 43.949 kb on + strand, within AO353_00230at 43.950 kb on - strand, within AO353_00230at 43.970 kb on + strand, within AO353_00230at 43.971 kb on - strand, within AO353_00230at 43.971 kb on - strand, within AO353_00230at 43.971 kb on - strand, within AO353_00230at 43.985 kb on + strand, within AO353_00230at 43.985 kb on + strand, within AO353_00230at 43.985 kb on + strand, within AO353_00230at 43.986 kb on - strand, within AO353_00230at 44.045 kb on + strand, within AO353_00230at 44.045 kb on + strand, within AO353_00230at 44.048 kb on + strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.072 kb on + strand, within AO353_00230at 44.072 kb on + strand, within AO353_00230at 44.072 kb on + strand, within AO353_00230at 44.073 kb on - strand, within AO353_00230at 44.073 kb on - strand, within AO353_00230at 44.082 kb on - strand, within AO353_00230at 44.082 kb on - strand, within AO353_00230at 44.082 kb on - strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.376 kb on - strand, within AO353_00230at 44.376 kb on - strand, within AO353_00230at 44.376 kb on - strand, within AO353_00230at 44.413 kb on + strand, within AO353_00230at 44.414 kb on - strand, within AO353_00230at 44.434 kb on - strandat 44.624 kb on + strand, within AO353_00235at 44.625 kb on - strand, within AO353_00235at 44.625 kb on - strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.648 kb on - strand, within AO353_00235at 44.648 kb on - strand, within AO353_00235at 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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42,658 + AO353_00225 0.49 +1.5
42,658 + AO353_00225 0.49 +0.3
42,659 - AO353_00225 0.49 -0.5
42,799 + AO353_00225 0.55 -0.8
42,799 + AO353_00225 0.55 +0.3
42,800 - AO353_00225 0.55 +0.6
42,860 - AO353_00225 0.58 -1.9
42,860 - AO353_00225 0.58 -0.8
42,860 - AO353_00225 0.58 -0.8
42,887 - AO353_00225 0.60 +0.3
43,055 - AO353_00225 0.68 -2.1
43,162 + AO353_00225 0.73 +0.2
43,187 - AO353_00225 0.74 +0.3
43,333 + AO353_00225 0.81 +0.3
43,333 + AO353_00225 0.81 +1.9
43,333 + AO353_00225 0.81 +0.0
43,334 - AO353_00225 0.81 +0.3
43,334 - AO353_00225 0.81 -0.1
43,334 - AO353_00225 0.81 -0.4
43,334 - AO353_00225 0.81 -0.1
43,503 + AO353_00225 0.90 -0.8
43,503 + AO353_00225 0.90 +1.4
43,503 + AO353_00225 0.90 +0.0
43,503 + AO353_00225 0.90 +0.3
43,503 + AO353_00225 0.90 -0.5
43,503 + AO353_00225 0.90 +0.2
43,504 - AO353_00225 0.90 -0.4
43,504 - AO353_00225 0.90 +3.2
43,504 - AO353_00225 0.90 -0.8
43,577 + +0.2
43,577 + -1.5
43,577 + +1.0
43,577 + +0.7
43,577 + +1.3
43,578 - -0.1
43,613 + +1.1
43,613 + +0.2
43,613 + +1.1
43,613 + +0.5
43,614 - -1.7
43,614 - -0.0
43,614 - +0.0
43,614 - -1.0
43,769 + AO353_00230 0.16 -3.0
43,769 + AO353_00230 0.16 -0.1
43,769 + AO353_00230 0.16 +0.3
43,769 + AO353_00230 0.16 +1.3
43,769 + AO353_00230 0.16 -0.5
43,769 + AO353_00230 0.16 -0.5
43,770 - AO353_00230 0.16 +0.7
43,770 - AO353_00230 0.16 -0.5
43,770 - AO353_00230 0.16 -0.5
43,770 - AO353_00230 0.16 -0.3
43,770 - AO353_00230 0.16 -0.6
43,770 - AO353_00230 0.16 +1.9
43,770 - AO353_00230 0.16 -0.8
43,770 - AO353_00230 0.16 -0.2
43,770 - AO353_00230 0.16 +0.8
43,770 - AO353_00230 0.16 +1.3
43,770 - AO353_00230 0.16 +0.9
43,770 - AO353_00230 0.16 +0.4
43,770 - AO353_00230 0.16 +1.3
43,770 - AO353_00230 0.16 -0.6
43,949 + AO353_00230 0.37 -0.7
43,949 + AO353_00230 0.37 -0.7
43,950 - AO353_00230 0.37 +3.4
43,970 + AO353_00230 0.39 -0.4
43,971 - AO353_00230 0.39 -0.7
43,971 - AO353_00230 0.39 +0.0
43,971 - AO353_00230 0.39 +1.3
43,985 + AO353_00230 0.41 -0.1
43,985 + AO353_00230 0.41 +0.2
43,985 + AO353_00230 0.41 -2.1
43,986 - AO353_00230 0.41 -0.6
44,045 + AO353_00230 0.48 +2.9
44,045 + AO353_00230 0.48 -0.3
44,048 + AO353_00230 0.48 +0.1
44,049 - AO353_00230 0.48 +0.3
44,049 - AO353_00230 0.48 +1.1
44,049 - AO353_00230 0.48 +0.4
44,049 - AO353_00230 0.48 -1.2
44,049 - AO353_00230 0.48 -0.6
44,072 + AO353_00230 0.51 +2.0
44,072 + AO353_00230 0.51 +1.3
44,072 + AO353_00230 0.51 +1.3
44,073 - AO353_00230 0.51 +0.4
44,073 - AO353_00230 0.51 -1.1
44,082 - AO353_00230 0.52 +0.4
44,082 - AO353_00230 0.52 -0.6
44,082 - AO353_00230 0.52 -0.8
44,375 + AO353_00230 0.85 -2.0
44,375 + AO353_00230 0.85 +0.9
44,375 + AO353_00230 0.85 -0.7
44,375 + AO353_00230 0.85 +0.2
44,376 - AO353_00230 0.85 -1.8
44,376 - AO353_00230 0.85 -0.5
44,376 - AO353_00230 0.85 +0.2
44,413 + AO353_00230 0.90 -0.0
44,414 - AO353_00230 0.90 -1.0
44,434 - -0.7
44,624 + AO353_00235 0.21 -0.5
44,625 - AO353_00235 0.22 -0.3
44,625 - AO353_00235 0.22 +0.9
44,647 + AO353_00235 0.30 +0.4
44,647 + AO353_00235 0.30 -0.7
44,647 + AO353_00235 0.30 +0.3
44,647 + AO353_00235 0.30 -0.8
44,648 - AO353_00235 0.31 -1.0
44,648 - AO353_00235 0.31 +0.1
45,092 - -0.1
45,092 - -1.3
45,092 - -0.1
45,092 - -2.1
45,092 - -0.6
45,092 - +1.0
45,092 - -0.3
45,092 - +0.3
45,092 - +2.9
45,092 - -0.3
45,092 - -1.0
45,092 - +0.8
45,095 - +0.3
45,095 - +0.6
45,095 - +0.3
45,095 - -1.1
45,095 - -0.1
45,095 - +0.5
45,095 - +1.2
45,148 - -1.2
45,148 - -0.8
45,148 - -1.0
45,148 - -0.0
45,148 - +0.4
45,148 - -0.6
45,148 - -1.2
45,192 - -0.1

Or see this region's nucleotide sequence