Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_708 and HP15_709 overlap by 4 nucleotides HP15_709 and HP15_710 overlap by 4 nucleotides HP15_710 and HP15_711 are separated by 202 nucleotides
HP15_708: HP15_708 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 716,306 to 717,169
_708
HP15_709: HP15_709 - outer-membrane lipoprotein lolB precursor, at 717,166 to 717,798
_709
HP15_710: HP15_710 - tetratricopeptide TPR_2 repeat protein, at 717,795 to 719,573
_710
HP15_711: HP15_711 - glutamyl-tRNA reductase, at 719,776 to 721,080
_711
Position (kb) 717
718
719
720 Strain fitness (log2 ratio) -1
0
1 at 717.871 kb on - strand at 717.987 kb on - strand, within HP15_710 at 718.087 kb on - strand, within HP15_710 at 718.127 kb on - strand, within HP15_710 at 718.200 kb on - strand, within HP15_710 at 718.301 kb on - strand, within HP15_710 at 718.301 kb on - strand, within HP15_710 at 718.416 kb on - strand, within HP15_710 at 718.457 kb on - strand, within HP15_710 at 718.457 kb on - strand, within HP15_710 at 718.476 kb on - strand, within HP15_710 at 718.486 kb on - strand, within HP15_710 at 718.516 kb on - strand, within HP15_710 at 718.563 kb on + strand, within HP15_710 at 718.721 kb on - strand, within HP15_710 at 718.903 kb on - strand, within HP15_710 at 718.913 kb on - strand, within HP15_710 at 718.964 kb on - strand, within HP15_710 at 719.681 kb on + strand at 719.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 717,871 - +0.5 717,987 - HP15_710 0.11 -0.3 718,087 - HP15_710 0.16 -0.4 718,127 - HP15_710 0.19 +1.0 718,200 - HP15_710 0.23 +0.8 718,301 - HP15_710 0.28 -0.7 718,301 - HP15_710 0.28 -0.0 718,416 - HP15_710 0.35 +0.8 718,457 - HP15_710 0.37 +0.5 718,457 - HP15_710 0.37 +0.0 718,476 - HP15_710 0.38 +1.0 718,486 - HP15_710 0.39 -0.3 718,516 - HP15_710 0.41 +0.7 718,563 + HP15_710 0.43 -0.9 718,721 - HP15_710 0.52 +0.1 718,903 - HP15_710 0.62 -0.6 718,913 - HP15_710 0.63 -1.1 718,964 - HP15_710 0.66 +0.2 719,681 + -0.1 719,704 - +0.8
Or see this region's nucleotide sequence