Strain Fitness in Marinobacter adhaerens HP15 around HP15_4092

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4091 and HP15_4092 are separated by 3 nucleotidesHP15_4092 and HP15_4093 are separated by 141 nucleotides HP15_4091: HP15_4091 - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein, at 4,323,537 to 4,326,353 _4091 HP15_4092: HP15_4092 - nitroreductase A, at 4,326,357 to 4,327,094 _4092 HP15_4093: HP15_4093 - membrane protein containing diguanylate cyclase, predicted domains, at 4,327,236 to 4,328,426 _4093 Position (kb) 4326 4327 4328Strain fitness (log2 ratio) -1 0 1at 4325.392 kb on + strand, within HP15_4091at 4325.400 kb on - strand, within HP15_4091at 4325.414 kb on - strand, within HP15_4091at 4325.435 kb on + strand, within HP15_4091at 4325.469 kb on + strand, within HP15_4091at 4325.509 kb on - strand, within HP15_4091at 4325.514 kb on + strand, within HP15_4091at 4325.525 kb on + strand, within HP15_4091at 4325.585 kb on + strand, within HP15_4091at 4325.593 kb on - strand, within HP15_4091at 4325.701 kb on - strand, within HP15_4091at 4325.775 kb on + strand, within HP15_4091at 4325.783 kb on - strand, within HP15_4091at 4325.783 kb on - strand, within HP15_4091at 4325.783 kb on - strand, within HP15_4091at 4325.783 kb on - strand, within HP15_4091at 4325.895 kb on - strand, within HP15_4091at 4325.925 kb on + strand, within HP15_4091at 4325.966 kb on + strand, within HP15_4091at 4325.974 kb on - strand, within HP15_4091at 4326.014 kb on - strand, within HP15_4091at 4326.019 kb on + strand, within HP15_4091at 4326.068 kb on - strand, within HP15_4091at 4326.115 kb on - strandat 4326.126 kb on - strandat 4326.128 kb on + strandat 4326.240 kb on + strandat 4326.435 kb on - strand, within HP15_4092at 4326.437 kb on + strand, within HP15_4092at 4326.445 kb on - strand, within HP15_4092at 4326.445 kb on - strand, within HP15_4092at 4326.455 kb on - strand, within HP15_4092at 4326.481 kb on - strand, within HP15_4092at 4326.580 kb on + strand, within HP15_4092at 4326.602 kb on - strand, within HP15_4092at 4326.607 kb on - strand, within HP15_4092at 4326.614 kb on + strand, within HP15_4092at 4326.676 kb on + strand, within HP15_4092at 4326.684 kb on - strand, within HP15_4092at 4326.697 kb on + strand, within HP15_4092at 4326.702 kb on + strand, within HP15_4092at 4326.763 kb on - strand, within HP15_4092at 4326.783 kb on - strand, within HP15_4092at 4326.790 kb on + strand, within HP15_4092at 4326.796 kb on - strand, within HP15_4092at 4326.811 kb on + strand, within HP15_4092at 4326.838 kb on - strand, within HP15_4092at 4326.886 kb on + strand, within HP15_4092at 4326.886 kb on + strand, within HP15_4092at 4326.894 kb on - strand, within HP15_4092at 4327.091 kb on - strandat 4327.098 kb on + strandat 4327.118 kb on - strandat 4327.173 kb on + strandat 4327.173 kb on + strandat 4327.186 kb on + strandat 4327.211 kb on + strandat 4327.224 kb on - strandat 4327.315 kb on - strandat 4327.360 kb on - strand, within HP15_4093at 4327.360 kb on - strand, within HP15_4093at 4327.447 kb on - strand, within HP15_4093at 4327.500 kb on - strand, within HP15_4093at 4327.500 kb on - strand, within HP15_4093at 4327.506 kb on + strand, within HP15_4093at 4327.593 kb on + strand, within HP15_4093at 4327.651 kb on - strand, within HP15_4093at 4327.735 kb on - strand, within HP15_4093at 4327.878 kb on + strand, within HP15_4093at 4327.901 kb on - strand, within HP15_4093at 4327.906 kb on - strand, within HP15_4093at 4327.935 kb on - strand, within HP15_4093at 4327.988 kb on + strand, within HP15_4093

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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4,325,392 + HP15_4091 0.66 +1.3
4,325,400 - HP15_4091 0.66 -0.3
4,325,414 - HP15_4091 0.67 +0.3
4,325,435 + HP15_4091 0.67 +0.9
4,325,469 + HP15_4091 0.69 -0.0
4,325,509 - HP15_4091 0.70 +0.0
4,325,514 + HP15_4091 0.70 -0.1
4,325,525 + HP15_4091 0.71 +0.2
4,325,585 + HP15_4091 0.73 +0.7
4,325,593 - HP15_4091 0.73 +0.4
4,325,701 - HP15_4091 0.77 +0.9
4,325,775 + HP15_4091 0.79 +0.1
4,325,783 - HP15_4091 0.80 +1.1
4,325,783 - HP15_4091 0.80 +0.5
4,325,783 - HP15_4091 0.80 +0.4
4,325,783 - HP15_4091 0.80 -0.0
4,325,895 - HP15_4091 0.84 -0.2
4,325,925 + HP15_4091 0.85 -0.3
4,325,966 + HP15_4091 0.86 +0.3
4,325,974 - HP15_4091 0.87 +0.7
4,326,014 - HP15_4091 0.88 -0.1
4,326,019 + HP15_4091 0.88 -0.1
4,326,068 - HP15_4091 0.90 +0.7
4,326,115 - -0.8
4,326,126 - +0.8
4,326,128 + -1.1
4,326,240 + -0.1
4,326,435 - HP15_4092 0.11 +0.2
4,326,437 + HP15_4092 0.11 -0.7
4,326,445 - HP15_4092 0.12 -0.1
4,326,445 - HP15_4092 0.12 +0.8
4,326,455 - HP15_4092 0.13 -0.1
4,326,481 - HP15_4092 0.17 -0.3
4,326,580 + HP15_4092 0.30 -0.2
4,326,602 - HP15_4092 0.33 -0.4
4,326,607 - HP15_4092 0.34 -1.3
4,326,614 + HP15_4092 0.35 -0.7
4,326,676 + HP15_4092 0.43 +0.2
4,326,684 - HP15_4092 0.44 +0.5
4,326,697 + HP15_4092 0.46 -0.4
4,326,702 + HP15_4092 0.47 +0.1
4,326,763 - HP15_4092 0.55 +0.3
4,326,783 - HP15_4092 0.58 +0.8
4,326,790 + HP15_4092 0.59 -0.1
4,326,796 - HP15_4092 0.59 -0.3
4,326,811 + HP15_4092 0.62 +0.2
4,326,838 - HP15_4092 0.65 +0.4
4,326,886 + HP15_4092 0.72 +0.5
4,326,886 + HP15_4092 0.72 +1.1
4,326,894 - HP15_4092 0.73 +0.7
4,327,091 - +0.7
4,327,098 + +0.6
4,327,118 - -0.0
4,327,173 + +0.3
4,327,173 + -0.9
4,327,186 + -1.0
4,327,211 + -0.2
4,327,224 - -0.4
4,327,315 - -1.1
4,327,360 - HP15_4093 0.10 +0.4
4,327,360 - HP15_4093 0.10 +0.2
4,327,447 - HP15_4093 0.18 +0.2
4,327,500 - HP15_4093 0.22 +0.3
4,327,500 - HP15_4093 0.22 -0.4
4,327,506 + HP15_4093 0.23 -0.2
4,327,593 + HP15_4093 0.30 +0.7
4,327,651 - HP15_4093 0.35 -0.5
4,327,735 - HP15_4093 0.42 +0.4
4,327,878 + HP15_4093 0.54 +0.7
4,327,901 - HP15_4093 0.56 +0.4
4,327,906 - HP15_4093 0.56 +0.1
4,327,935 - HP15_4093 0.59 -0.4
4,327,988 + HP15_4093 0.63 -0.5

Or see this region's nucleotide sequence