Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4083 and HP15_4084 overlap by 4 nucleotides HP15_4084 and HP15_4085 are separated by 37 nucleotides HP15_4085 and HP15_4086 are separated by 166 nucleotides HP15_4086 and HP15_4087 are separated by 18 nucleotides
HP15_4083: HP15_4083 - ethanolamine ammonia-lyase heavy chain, at 4,315,645 to 4,317,045
_4083
HP15_4084: HP15_4084 - ethanolamine ammonia-lyase small subunit, at 4,317,042 to 4,317,872
_4084
HP15_4085: HP15_4085 - protein containing methyltransferase type 12 domain, at 4,317,910 to 4,318,665
_4085
HP15_4086: HP15_4086 - ATPase, ParA family protein, at 4,318,832 to 4,319,572
_4086
HP15_4087: HP15_4087 - transcriptional regulator, GntR family, at 4,319,591 to 4,320,322
_4087
Position (kb) 4317
4318
4319 Strain fitness (log2 ratio) -1
0
1 at 4317.019 kb on + strand at 4317.038 kb on + strand at 4317.038 kb on + strand at 4317.046 kb on - strand at 4317.046 kb on - strand at 4317.046 kb on - strand at 4317.046 kb on - strand at 4317.056 kb on - strand at 4317.066 kb on + strand at 4317.118 kb on - strand at 4317.209 kb on + strand, within HP15_4084 at 4317.391 kb on - strand, within HP15_4084 at 4317.488 kb on + strand, within HP15_4084 at 4317.598 kb on + strand, within HP15_4084 at 4317.654 kb on - strand, within HP15_4084 at 4317.660 kb on - strand, within HP15_4084 at 4317.810 kb on + strand at 4317.818 kb on - strand at 4318.179 kb on + strand, within HP15_4085 at 4318.187 kb on - strand, within HP15_4085 at 4318.234 kb on - strand, within HP15_4085 at 4318.283 kb on + strand, within HP15_4085 at 4318.288 kb on + strand, within HP15_4085 at 4318.368 kb on + strand, within HP15_4085 at 4318.394 kb on + strand, within HP15_4085 at 4318.441 kb on + strand, within HP15_4085 at 4318.441 kb on + strand, within HP15_4085 at 4318.441 kb on + strand, within HP15_4085 at 4318.441 kb on + strand, within HP15_4085 at 4318.441 kb on + strand, within HP15_4085 at 4318.448 kb on - strand, within HP15_4085 at 4318.449 kb on - strand, within HP15_4085 at 4318.449 kb on - strand, within HP15_4085 at 4318.482 kb on - strand, within HP15_4085 at 4318.512 kb on + strand, within HP15_4085 at 4318.581 kb on - strand, within HP15_4085 at 4318.626 kb on - strand at 4318.760 kb on - strand at 4318.765 kb on - strand at 4318.839 kb on - strand at 4318.864 kb on - strand at 4318.923 kb on + strand, within HP15_4086 at 4318.923 kb on + strand, within HP15_4086 at 4318.923 kb on + strand, within HP15_4086 at 4318.931 kb on - strand, within HP15_4086 at 4318.933 kb on + strand, within HP15_4086 at 4318.933 kb on + strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4318.941 kb on - strand, within HP15_4086 at 4319.025 kb on - strand, within HP15_4086 at 4319.153 kb on - strand, within HP15_4086 at 4319.192 kb on + strand, within HP15_4086 at 4319.192 kb on + strand, within HP15_4086 at 4319.364 kb on - strand, within HP15_4086 at 4319.399 kb on - strand, within HP15_4086 at 4319.413 kb on + strand, within HP15_4086 at 4319.425 kb on + strand, within HP15_4086 at 4319.566 kb on + strand at 4319.574 kb on - strand at 4319.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,317,019 + -0.3 4,317,038 + +0.6 4,317,038 + +0.6 4,317,046 - -0.3 4,317,046 - +0.1 4,317,046 - -0.2 4,317,046 - -0.3 4,317,056 - -0.2 4,317,066 + -0.2 4,317,118 - +0.1 4,317,209 + HP15_4084 0.20 +1.1 4,317,391 - HP15_4084 0.42 +0.1 4,317,488 + HP15_4084 0.54 +0.4 4,317,598 + HP15_4084 0.67 -0.2 4,317,654 - HP15_4084 0.74 -0.5 4,317,660 - HP15_4084 0.74 +0.8 4,317,810 + -0.2 4,317,818 - +1.2 4,318,179 + HP15_4085 0.36 +0.0 4,318,187 - HP15_4085 0.37 +0.5 4,318,234 - HP15_4085 0.43 +0.4 4,318,283 + HP15_4085 0.49 +0.5 4,318,288 + HP15_4085 0.50 +0.8 4,318,368 + HP15_4085 0.61 +0.1 4,318,394 + HP15_4085 0.64 -0.2 4,318,441 + HP15_4085 0.70 +0.7 4,318,441 + HP15_4085 0.70 -0.9 4,318,441 + HP15_4085 0.70 +0.5 4,318,441 + HP15_4085 0.70 +0.0 4,318,441 + HP15_4085 0.70 +0.3 4,318,448 - HP15_4085 0.71 +1.2 4,318,449 - HP15_4085 0.71 -0.2 4,318,449 - HP15_4085 0.71 -0.1 4,318,482 - HP15_4085 0.76 +0.1 4,318,512 + HP15_4085 0.80 +0.3 4,318,581 - HP15_4085 0.89 +0.5 4,318,626 - -0.3 4,318,760 - -0.0 4,318,765 - -0.5 4,318,839 - +0.3 4,318,864 - +0.4 4,318,923 + HP15_4086 0.12 -0.3 4,318,923 + HP15_4086 0.12 -0.2 4,318,923 + HP15_4086 0.12 +0.2 4,318,931 - HP15_4086 0.13 -0.1 4,318,933 + HP15_4086 0.14 +1.1 4,318,933 + HP15_4086 0.14 -0.0 4,318,941 - HP15_4086 0.15 -0.1 4,318,941 - HP15_4086 0.15 -0.2 4,318,941 - HP15_4086 0.15 -0.2 4,319,025 - HP15_4086 0.26 +0.0 4,319,153 - HP15_4086 0.43 +0.7 4,319,192 + HP15_4086 0.49 +0.1 4,319,192 + HP15_4086 0.49 +0.2 4,319,364 - HP15_4086 0.72 +0.1 4,319,399 - HP15_4086 0.77 +0.7 4,319,413 + HP15_4086 0.78 +0.3 4,319,425 + HP15_4086 0.80 -0.2 4,319,566 + +0.6 4,319,574 - +0.7 4,319,597 - -1.5
Or see this region's nucleotide sequence