Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2181 and HP15_2182 are separated by 156 nucleotides HP15_2182 and HP15_2183 are separated by 238 nucleotides HP15_2183 and HP15_2184 are separated by 162 nucleotides
HP15_2181: HP15_2181 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,292,902 to 2,294,746
_2181
HP15_2182: HP15_2182 - histone-like bacterial DNA-binding protein, at 2,294,903 to 2,295,175
_2182
HP15_2183: HP15_2183 - DNA-binding ATP-dependent protease La, at 2,295,414 to 2,297,831
_2183
HP15_2184: HP15_2184 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,297,994 to 2,299,277
_2184
Position (kb)
2295
2296
2297
2298 Strain fitness (log2 ratio)
-1
0
1
2 at 2294.613 kb on + strand at 2294.628 kb on - strand at 2294.722 kb on - strand at 2294.764 kb on + strand at 2294.764 kb on + strand at 2294.779 kb on + strand at 2294.819 kb on - strand at 2295.519 kb on - strand at 2295.524 kb on - strand at 2295.536 kb on - strand at 2295.654 kb on - strand at 2295.773 kb on - strand, within HP15_2183 at 2295.820 kb on - strand, within HP15_2183 at 2295.934 kb on + strand, within HP15_2183 at 2296.118 kb on + strand, within HP15_2183 at 2296.302 kb on - strand, within HP15_2183 at 2296.315 kb on + strand, within HP15_2183 at 2296.323 kb on - strand, within HP15_2183 at 2296.323 kb on - strand, within HP15_2183 at 2296.330 kb on + strand, within HP15_2183 at 2296.330 kb on + strand, within HP15_2183 at 2296.439 kb on - strand, within HP15_2183 at 2296.626 kb on - strand, within HP15_2183 at 2296.643 kb on - strand, within HP15_2183 at 2296.722 kb on + strand, within HP15_2183 at 2296.778 kb on + strand, within HP15_2183 at 2296.785 kb on + strand, within HP15_2183 at 2296.786 kb on + strand, within HP15_2183 at 2296.806 kb on + strand, within HP15_2183 at 2296.806 kb on + strand, within HP15_2183 at 2296.814 kb on - strand, within HP15_2183 at 2296.814 kb on - strand, within HP15_2183 at 2296.946 kb on + strand, within HP15_2183 at 2297.066 kb on + strand, within HP15_2183 at 2297.128 kb on - strand, within HP15_2183 at 2297.152 kb on - strand, within HP15_2183 at 2297.434 kb on + strand, within HP15_2183 at 2297.458 kb on + strand, within HP15_2183 at 2297.481 kb on + strand, within HP15_2183 at 2297.489 kb on - strand, within HP15_2183 at 2297.512 kb on + strand, within HP15_2183 at 2297.513 kb on - strand, within HP15_2183 at 2297.590 kb on - strand at 2297.811 kb on + strand at 2297.860 kb on + strand at 2298.018 kb on - strand at 2298.018 kb on - strand at 2298.550 kb on + strand, within HP15_2184
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,294,613 + +0.2 2,294,628 - -0.6 2,294,722 - +0.2 2,294,764 + +0.6 2,294,764 + +0.6 2,294,779 + -0.6 2,294,819 - +0.6 2,295,519 - +1.3 2,295,524 - +1.4 2,295,536 - +0.3 2,295,654 - +1.2 2,295,773 - HP15_2183 0.15 +0.8 2,295,820 - HP15_2183 0.17 +1.8 2,295,934 + HP15_2183 0.22 +1.1 2,296,118 + HP15_2183 0.29 +1.0 2,296,302 - HP15_2183 0.37 +2.3 2,296,315 + HP15_2183 0.37 +1.7 2,296,323 - HP15_2183 0.38 +1.3 2,296,323 - HP15_2183 0.38 +1.0 2,296,330 + HP15_2183 0.38 +1.8 2,296,330 + HP15_2183 0.38 +2.6 2,296,439 - HP15_2183 0.42 +2.0 2,296,626 - HP15_2183 0.50 +0.8 2,296,643 - HP15_2183 0.51 +0.6 2,296,722 + HP15_2183 0.54 +1.3 2,296,778 + HP15_2183 0.56 +1.4 2,296,785 + HP15_2183 0.57 +0.4 2,296,786 + HP15_2183 0.57 +1.0 2,296,806 + HP15_2183 0.58 +0.0 2,296,806 + HP15_2183 0.58 +0.9 2,296,814 - HP15_2183 0.58 +1.3 2,296,814 - HP15_2183 0.58 +1.0 2,296,946 + HP15_2183 0.63 +1.2 2,297,066 + HP15_2183 0.68 +1.1 2,297,128 - HP15_2183 0.71 +0.9 2,297,152 - HP15_2183 0.72 -0.0 2,297,434 + HP15_2183 0.84 +0.9 2,297,458 + HP15_2183 0.85 +1.5 2,297,481 + HP15_2183 0.85 +1.2 2,297,489 - HP15_2183 0.86 +0.7 2,297,512 + HP15_2183 0.87 +0.9 2,297,513 - HP15_2183 0.87 +0.7 2,297,590 - +1.5 2,297,811 + +1.2 2,297,860 + +1.4 2,298,018 - -1.4 2,298,018 - -0.6 2,298,550 + HP15_2184 0.43 -0.1
Or see this region's nucleotide sequence