Strain Fitness in Marinobacter adhaerens HP15 around HP15_2183

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2181 and HP15_2182 are separated by 156 nucleotidesHP15_2182 and HP15_2183 are separated by 238 nucleotidesHP15_2183 and HP15_2184 are separated by 162 nucleotides HP15_2181: HP15_2181 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,292,902 to 2,294,746 _2181 HP15_2182: HP15_2182 - histone-like bacterial DNA-binding protein, at 2,294,903 to 2,295,175 _2182 HP15_2183: HP15_2183 - DNA-binding ATP-dependent protease La, at 2,295,414 to 2,297,831 _2183 HP15_2184: HP15_2184 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,297,994 to 2,299,277 _2184 Position (kb) 2295 2296 2297 2298Strain fitness (log2 ratio) -1 0 1 2at 2294.613 kb on + strandat 2294.628 kb on - strandat 2294.722 kb on - strandat 2294.764 kb on + strandat 2294.764 kb on + strandat 2294.779 kb on + strandat 2294.819 kb on - strandat 2295.519 kb on - strandat 2295.524 kb on - strandat 2295.536 kb on - strandat 2295.654 kb on - strandat 2295.773 kb on - strand, within HP15_2183at 2295.820 kb on - strand, within HP15_2183at 2295.934 kb on + strand, within HP15_2183at 2296.118 kb on + strand, within HP15_2183at 2296.302 kb on - strand, within HP15_2183at 2296.315 kb on + strand, within HP15_2183at 2296.323 kb on - strand, within HP15_2183at 2296.323 kb on - strand, within HP15_2183at 2296.330 kb on + strand, within HP15_2183at 2296.330 kb on + strand, within HP15_2183at 2296.439 kb on - strand, within HP15_2183at 2296.626 kb on - strand, within HP15_2183at 2296.643 kb on - strand, within HP15_2183at 2296.722 kb on + strand, within HP15_2183at 2296.778 kb on + strand, within HP15_2183at 2296.785 kb on + strand, within HP15_2183at 2296.786 kb on + strand, within HP15_2183at 2296.806 kb on + strand, within HP15_2183at 2296.806 kb on + strand, within HP15_2183at 2296.814 kb on - strand, within HP15_2183at 2296.814 kb on - strand, within HP15_2183at 2296.946 kb on + strand, within HP15_2183at 2297.066 kb on + strand, within HP15_2183at 2297.128 kb on - strand, within HP15_2183at 2297.152 kb on - strand, within HP15_2183at 2297.434 kb on + strand, within HP15_2183at 2297.458 kb on + strand, within HP15_2183at 2297.481 kb on + strand, within HP15_2183at 2297.489 kb on - strand, within HP15_2183at 2297.512 kb on + strand, within HP15_2183at 2297.513 kb on - strand, within HP15_2183at 2297.590 kb on - strandat 2297.811 kb on + strandat 2297.860 kb on + strandat 2298.018 kb on - strandat 2298.018 kb on - strandat 2298.550 kb on + strand, within HP15_2184

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,294,613 + +0.2
2,294,628 - -0.6
2,294,722 - +0.2
2,294,764 + +0.6
2,294,764 + +0.6
2,294,779 + -0.6
2,294,819 - +0.6
2,295,519 - +1.3
2,295,524 - +1.4
2,295,536 - +0.3
2,295,654 - +1.2
2,295,773 - HP15_2183 0.15 +0.8
2,295,820 - HP15_2183 0.17 +1.8
2,295,934 + HP15_2183 0.22 +1.1
2,296,118 + HP15_2183 0.29 +1.0
2,296,302 - HP15_2183 0.37 +2.3
2,296,315 + HP15_2183 0.37 +1.7
2,296,323 - HP15_2183 0.38 +1.3
2,296,323 - HP15_2183 0.38 +1.0
2,296,330 + HP15_2183 0.38 +1.8
2,296,330 + HP15_2183 0.38 +2.6
2,296,439 - HP15_2183 0.42 +2.0
2,296,626 - HP15_2183 0.50 +0.8
2,296,643 - HP15_2183 0.51 +0.6
2,296,722 + HP15_2183 0.54 +1.3
2,296,778 + HP15_2183 0.56 +1.4
2,296,785 + HP15_2183 0.57 +0.4
2,296,786 + HP15_2183 0.57 +1.0
2,296,806 + HP15_2183 0.58 +0.0
2,296,806 + HP15_2183 0.58 +0.9
2,296,814 - HP15_2183 0.58 +1.3
2,296,814 - HP15_2183 0.58 +1.0
2,296,946 + HP15_2183 0.63 +1.2
2,297,066 + HP15_2183 0.68 +1.1
2,297,128 - HP15_2183 0.71 +0.9
2,297,152 - HP15_2183 0.72 -0.0
2,297,434 + HP15_2183 0.84 +0.9
2,297,458 + HP15_2183 0.85 +1.5
2,297,481 + HP15_2183 0.85 +1.2
2,297,489 - HP15_2183 0.86 +0.7
2,297,512 + HP15_2183 0.87 +0.9
2,297,513 - HP15_2183 0.87 +0.7
2,297,590 - +1.5
2,297,811 + +1.2
2,297,860 + +1.4
2,298,018 - -1.4
2,298,018 - -0.6
2,298,550 + HP15_2184 0.43 -0.1

Or see this region's nucleotide sequence