Strain Fitness in Marinobacter adhaerens HP15 around HP15_1576

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1575 and HP15_1576 overlap by 4 nucleotidesHP15_1576 and HP15_1577 are separated by 404 nucleotidesHP15_1577 and HP15_1578 overlap by 18 nucleotides HP15_1575: HP15_1575 - metallophosphoesterase, at 1,658,954 to 1,660,075 _1575 HP15_1576: HP15_1576 - GTP-binding protein, at 1,660,072 to 1,662,720 _1576 HP15_1577: HP15_1577 - hypothetical protein, at 1,663,125 to 1,663,325 _1577 HP15_1578: HP15_1578 - type I restriction-modification system, methyltransferase subunit, at 1,663,308 to 1,665,731 _1578 Position (kb) 1660 1661 1662 1663Strain fitness (log2 ratio) -1 0 1at 1659.128 kb on + strand, within HP15_1575at 1659.137 kb on - strand, within HP15_1575at 1659.239 kb on + strand, within HP15_1575at 1659.336 kb on - strand, within HP15_1575at 1659.358 kb on + strand, within HP15_1575at 1659.358 kb on + strand, within HP15_1575at 1659.388 kb on + strand, within HP15_1575at 1659.434 kb on + strand, within HP15_1575at 1659.434 kb on + strand, within HP15_1575at 1659.436 kb on - strand, within HP15_1575at 1659.442 kb on - strand, within HP15_1575at 1659.446 kb on + strand, within HP15_1575at 1659.446 kb on + strand, within HP15_1575at 1659.525 kb on + strand, within HP15_1575at 1659.549 kb on + strand, within HP15_1575at 1659.549 kb on + strand, within HP15_1575at 1659.557 kb on - strand, within HP15_1575at 1659.557 kb on - strand, within HP15_1575at 1659.659 kb on - strand, within HP15_1575at 1659.665 kb on - strand, within HP15_1575at 1659.737 kb on + strand, within HP15_1575at 1659.768 kb on - strand, within HP15_1575at 1659.768 kb on - strand, within HP15_1575at 1659.876 kb on - strand, within HP15_1575at 1659.964 kb on - strandat 1660.000 kb on + strandat 1660.008 kb on - strandat 1660.156 kb on - strandat 1660.345 kb on - strand, within HP15_1576at 1660.435 kb on - strand, within HP15_1576at 1660.459 kb on + strand, within HP15_1576at 1660.460 kb on - strand, within HP15_1576at 1660.485 kb on + strand, within HP15_1576at 1660.493 kb on - strand, within HP15_1576at 1660.503 kb on - strand, within HP15_1576at 1660.508 kb on - strand, within HP15_1576at 1660.513 kb on - strand, within HP15_1576at 1660.565 kb on + strand, within HP15_1576at 1660.608 kb on + strand, within HP15_1576at 1660.616 kb on - strand, within HP15_1576at 1660.794 kb on + strand, within HP15_1576at 1660.832 kb on + strand, within HP15_1576at 1660.837 kb on + strand, within HP15_1576at 1660.888 kb on + strand, within HP15_1576at 1660.996 kb on + strand, within HP15_1576at 1661.167 kb on - strand, within HP15_1576at 1661.186 kb on + strand, within HP15_1576at 1661.186 kb on + strand, within HP15_1576at 1661.221 kb on - strand, within HP15_1576at 1661.252 kb on - strand, within HP15_1576at 1661.380 kb on + strand, within HP15_1576at 1661.440 kb on - strand, within HP15_1576at 1661.519 kb on + strand, within HP15_1576at 1661.567 kb on + strand, within HP15_1576at 1661.617 kb on + strand, within HP15_1576at 1661.671 kb on - strand, within HP15_1576at 1661.690 kb on + strand, within HP15_1576at 1661.802 kb on + strand, within HP15_1576at 1661.810 kb on - strand, within HP15_1576at 1661.817 kb on + strand, within HP15_1576at 1661.825 kb on - strand, within HP15_1576at 1661.849 kb on + strand, within HP15_1576at 1661.998 kb on + strand, within HP15_1576at 1662.081 kb on + strand, within HP15_1576at 1662.336 kb on + strand, within HP15_1576at 1662.343 kb on - strand, within HP15_1576at 1662.393 kb on + strand, within HP15_1576at 1662.472 kb on + strandat 1662.480 kb on - strandat 1662.492 kb on - strandat 1662.529 kb on - strandat 1662.552 kb on + strandat 1662.739 kb on + strandat 1662.749 kb on + strandat 1662.779 kb on - strandat 1662.835 kb on - strandat 1662.916 kb on + strandat 1662.936 kb on - strandat 1663.063 kb on + strandat 1663.106 kb on - strandat 1663.141 kb on - strandat 1663.333 kb on - strandat 1663.377 kb on + strandat 1663.402 kb on + strandat 1663.412 kb on + strandat 1663.430 kb on - strandat 1663.525 kb on - strandat 1663.525 kb on - strandat 1663.571 kb on - strand, within HP15_1578

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,659,128 + HP15_1575 0.16 -0.0
1,659,137 - HP15_1575 0.16 +0.1
1,659,239 + HP15_1575 0.25 -0.0
1,659,336 - HP15_1575 0.34 +0.1
1,659,358 + HP15_1575 0.36 +0.2
1,659,358 + HP15_1575 0.36 -0.1
1,659,388 + HP15_1575 0.39 -0.2
1,659,434 + HP15_1575 0.43 +0.4
1,659,434 + HP15_1575 0.43 +0.3
1,659,436 - HP15_1575 0.43 -1.0
1,659,442 - HP15_1575 0.43 +0.0
1,659,446 + HP15_1575 0.44 +0.7
1,659,446 + HP15_1575 0.44 -0.4
1,659,525 + HP15_1575 0.51 -0.2
1,659,549 + HP15_1575 0.53 -0.8
1,659,549 + HP15_1575 0.53 +0.4
1,659,557 - HP15_1575 0.54 -0.6
1,659,557 - HP15_1575 0.54 +0.2
1,659,659 - HP15_1575 0.63 -0.5
1,659,665 - HP15_1575 0.63 -0.7
1,659,737 + HP15_1575 0.70 +0.3
1,659,768 - HP15_1575 0.73 +0.7
1,659,768 - HP15_1575 0.73 +0.4
1,659,876 - HP15_1575 0.82 -0.5
1,659,964 - +0.7
1,660,000 + +0.8
1,660,008 - -1.6
1,660,156 - +0.6
1,660,345 - HP15_1576 0.10 -0.3
1,660,435 - HP15_1576 0.14 -0.3
1,660,459 + HP15_1576 0.15 +0.5
1,660,460 - HP15_1576 0.15 +0.3
1,660,485 + HP15_1576 0.16 +1.2
1,660,493 - HP15_1576 0.16 -0.1
1,660,503 - HP15_1576 0.16 +0.0
1,660,508 - HP15_1576 0.16 +0.7
1,660,513 - HP15_1576 0.17 +1.0
1,660,565 + HP15_1576 0.19 +0.6
1,660,608 + HP15_1576 0.20 -0.2
1,660,616 - HP15_1576 0.21 -1.3
1,660,794 + HP15_1576 0.27 +0.8
1,660,832 + HP15_1576 0.29 +1.1
1,660,837 + HP15_1576 0.29 -0.1
1,660,888 + HP15_1576 0.31 -0.4
1,660,996 + HP15_1576 0.35 -0.1
1,661,167 - HP15_1576 0.41 +0.1
1,661,186 + HP15_1576 0.42 +0.3
1,661,186 + HP15_1576 0.42 +0.7
1,661,221 - HP15_1576 0.43 +0.6
1,661,252 - HP15_1576 0.45 -0.1
1,661,380 + HP15_1576 0.49 +1.2
1,661,440 - HP15_1576 0.52 +0.9
1,661,519 + HP15_1576 0.55 +0.7
1,661,567 + HP15_1576 0.56 +0.4
1,661,617 + HP15_1576 0.58 +0.2
1,661,671 - HP15_1576 0.60 -0.1
1,661,690 + HP15_1576 0.61 +1.3
1,661,802 + HP15_1576 0.65 +0.1
1,661,810 - HP15_1576 0.66 -0.5
1,661,817 + HP15_1576 0.66 +0.0
1,661,825 - HP15_1576 0.66 +0.1
1,661,849 + HP15_1576 0.67 -0.3
1,661,998 + HP15_1576 0.73 -0.6
1,662,081 + HP15_1576 0.76 +0.4
1,662,336 + HP15_1576 0.85 -0.3
1,662,343 - HP15_1576 0.86 -0.4
1,662,393 + HP15_1576 0.88 -0.5
1,662,472 + -0.6
1,662,480 - +0.0
1,662,492 - -0.3
1,662,529 - -0.6
1,662,552 + +0.6
1,662,739 + +0.5
1,662,749 + +0.4
1,662,779 - -0.1
1,662,835 - +0.0
1,662,916 + -0.3
1,662,936 - +0.0
1,663,063 + +1.1
1,663,106 - -1.3
1,663,141 - +1.0
1,663,333 - +0.0
1,663,377 + +0.2
1,663,402 + +0.6
1,663,412 + +0.2
1,663,430 - +0.5
1,663,525 - +0.2
1,663,525 - -0.2
1,663,571 - HP15_1578 0.11 +0.0

Or see this region's nucleotide sequence