Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1575 and HP15_1576 overlap by 4 nucleotides HP15_1576 and HP15_1577 are separated by 404 nucleotides HP15_1577 and HP15_1578 overlap by 18 nucleotides
HP15_1575: HP15_1575 - metallophosphoesterase, at 1,658,954 to 1,660,075
_1575
HP15_1576: HP15_1576 - GTP-binding protein, at 1,660,072 to 1,662,720
_1576
HP15_1577: HP15_1577 - hypothetical protein, at 1,663,125 to 1,663,325
_1577
HP15_1578: HP15_1578 - type I restriction-modification system, methyltransferase subunit, at 1,663,308 to 1,665,731
_1578
Position (kb)
1660
1661
1662
1663 Strain fitness (log2 ratio)
-1
0
1 at 1659.128 kb on + strand, within HP15_1575 at 1659.137 kb on - strand, within HP15_1575 at 1659.239 kb on + strand, within HP15_1575 at 1659.336 kb on - strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.388 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.436 kb on - strand, within HP15_1575 at 1659.442 kb on - strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.525 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.659 kb on - strand, within HP15_1575 at 1659.665 kb on - strand, within HP15_1575 at 1659.737 kb on + strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575 at 1659.876 kb on - strand, within HP15_1575 at 1659.964 kb on - strand at 1660.000 kb on + strand at 1660.008 kb on - strand at 1660.156 kb on - strand at 1660.345 kb on - strand, within HP15_1576 at 1660.435 kb on - strand, within HP15_1576 at 1660.459 kb on + strand, within HP15_1576 at 1660.460 kb on - strand, within HP15_1576 at 1660.485 kb on + strand, within HP15_1576 at 1660.493 kb on - strand, within HP15_1576 at 1660.503 kb on - strand, within HP15_1576 at 1660.508 kb on - strand, within HP15_1576 at 1660.513 kb on - strand, within HP15_1576 at 1660.565 kb on + strand, within HP15_1576 at 1660.608 kb on + strand, within HP15_1576 at 1660.616 kb on - strand, within HP15_1576 at 1660.794 kb on + strand, within HP15_1576 at 1660.832 kb on + strand, within HP15_1576 at 1660.837 kb on + strand, within HP15_1576 at 1660.888 kb on + strand, within HP15_1576 at 1660.996 kb on + strand, within HP15_1576 at 1661.167 kb on - strand, within HP15_1576 at 1661.186 kb on + strand, within HP15_1576 at 1661.186 kb on + strand, within HP15_1576 at 1661.221 kb on - strand, within HP15_1576 at 1661.252 kb on - strand, within HP15_1576 at 1661.380 kb on + strand, within HP15_1576 at 1661.440 kb on - strand, within HP15_1576 at 1661.519 kb on + strand, within HP15_1576 at 1661.567 kb on + strand, within HP15_1576 at 1661.617 kb on + strand, within HP15_1576 at 1661.671 kb on - strand, within HP15_1576 at 1661.690 kb on + strand, within HP15_1576 at 1661.802 kb on + strand, within HP15_1576 at 1661.810 kb on - strand, within HP15_1576 at 1661.817 kb on + strand, within HP15_1576 at 1661.825 kb on - strand, within HP15_1576 at 1661.849 kb on + strand, within HP15_1576 at 1661.998 kb on + strand, within HP15_1576 at 1662.081 kb on + strand, within HP15_1576 at 1662.336 kb on + strand, within HP15_1576 at 1662.343 kb on - strand, within HP15_1576 at 1662.393 kb on + strand, within HP15_1576 at 1662.472 kb on + strand at 1662.480 kb on - strand at 1662.492 kb on - strand at 1662.529 kb on - strand at 1662.552 kb on + strand at 1662.739 kb on + strand at 1662.749 kb on + strand at 1662.779 kb on - strand at 1662.835 kb on - strand at 1662.916 kb on + strand at 1662.936 kb on - strand at 1663.063 kb on + strand at 1663.106 kb on - strand at 1663.141 kb on - strand at 1663.333 kb on - strand at 1663.377 kb on + strand at 1663.402 kb on + strand at 1663.412 kb on + strand at 1663.430 kb on - strand at 1663.525 kb on - strand at 1663.525 kb on - strand at 1663.571 kb on - strand, within HP15_1578
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,659,128 + HP15_1575 0.16 -0.0 1,659,137 - HP15_1575 0.16 +0.1 1,659,239 + HP15_1575 0.25 -0.0 1,659,336 - HP15_1575 0.34 +0.1 1,659,358 + HP15_1575 0.36 +0.2 1,659,358 + HP15_1575 0.36 -0.1 1,659,388 + HP15_1575 0.39 -0.2 1,659,434 + HP15_1575 0.43 +0.4 1,659,434 + HP15_1575 0.43 +0.3 1,659,436 - HP15_1575 0.43 -1.0 1,659,442 - HP15_1575 0.43 +0.0 1,659,446 + HP15_1575 0.44 +0.7 1,659,446 + HP15_1575 0.44 -0.4 1,659,525 + HP15_1575 0.51 -0.2 1,659,549 + HP15_1575 0.53 -0.8 1,659,549 + HP15_1575 0.53 +0.4 1,659,557 - HP15_1575 0.54 -0.6 1,659,557 - HP15_1575 0.54 +0.2 1,659,659 - HP15_1575 0.63 -0.5 1,659,665 - HP15_1575 0.63 -0.7 1,659,737 + HP15_1575 0.70 +0.3 1,659,768 - HP15_1575 0.73 +0.7 1,659,768 - HP15_1575 0.73 +0.4 1,659,876 - HP15_1575 0.82 -0.5 1,659,964 - +0.7 1,660,000 + +0.8 1,660,008 - -1.6 1,660,156 - +0.6 1,660,345 - HP15_1576 0.10 -0.3 1,660,435 - HP15_1576 0.14 -0.3 1,660,459 + HP15_1576 0.15 +0.5 1,660,460 - HP15_1576 0.15 +0.3 1,660,485 + HP15_1576 0.16 +1.2 1,660,493 - HP15_1576 0.16 -0.1 1,660,503 - HP15_1576 0.16 +0.0 1,660,508 - HP15_1576 0.16 +0.7 1,660,513 - HP15_1576 0.17 +1.0 1,660,565 + HP15_1576 0.19 +0.6 1,660,608 + HP15_1576 0.20 -0.2 1,660,616 - HP15_1576 0.21 -1.3 1,660,794 + HP15_1576 0.27 +0.8 1,660,832 + HP15_1576 0.29 +1.1 1,660,837 + HP15_1576 0.29 -0.1 1,660,888 + HP15_1576 0.31 -0.4 1,660,996 + HP15_1576 0.35 -0.1 1,661,167 - HP15_1576 0.41 +0.1 1,661,186 + HP15_1576 0.42 +0.3 1,661,186 + HP15_1576 0.42 +0.7 1,661,221 - HP15_1576 0.43 +0.6 1,661,252 - HP15_1576 0.45 -0.1 1,661,380 + HP15_1576 0.49 +1.2 1,661,440 - HP15_1576 0.52 +0.9 1,661,519 + HP15_1576 0.55 +0.7 1,661,567 + HP15_1576 0.56 +0.4 1,661,617 + HP15_1576 0.58 +0.2 1,661,671 - HP15_1576 0.60 -0.1 1,661,690 + HP15_1576 0.61 +1.3 1,661,802 + HP15_1576 0.65 +0.1 1,661,810 - HP15_1576 0.66 -0.5 1,661,817 + HP15_1576 0.66 +0.0 1,661,825 - HP15_1576 0.66 +0.1 1,661,849 + HP15_1576 0.67 -0.3 1,661,998 + HP15_1576 0.73 -0.6 1,662,081 + HP15_1576 0.76 +0.4 1,662,336 + HP15_1576 0.85 -0.3 1,662,343 - HP15_1576 0.86 -0.4 1,662,393 + HP15_1576 0.88 -0.5 1,662,472 + -0.6 1,662,480 - +0.0 1,662,492 - -0.3 1,662,529 - -0.6 1,662,552 + +0.6 1,662,739 + +0.5 1,662,749 + +0.4 1,662,779 - -0.1 1,662,835 - +0.0 1,662,916 + -0.3 1,662,936 - +0.0 1,663,063 + +1.1 1,663,106 - -1.3 1,663,141 - +1.0 1,663,333 - +0.0 1,663,377 + +0.2 1,663,402 + +0.6 1,663,412 + +0.2 1,663,430 - +0.5 1,663,525 - +0.2 1,663,525 - -0.2 1,663,571 - HP15_1578 0.11 +0.0
Or see this region's nucleotide sequence