Strain Fitness in Shewanella amazonensis SB2B around Sama_3508

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
4,140,863	+		Sama_3507	0.58	-0.3
4,140,863	+		Sama_3507	0.58	-0.4
4,140,863	+		Sama_3507	0.58	-0.5
4,140,863	+		Sama_3507	0.58	+0.1
4,140,863	+		Sama_3507	0.58	+0.6
4,140,863	+		Sama_3507	0.58	+0.2
4,140,863	+		Sama_3507	0.58	+0.3
4,140,864	-		Sama_3507	0.58	-1.9
4,140,864	-		Sama_3507	0.58	+0.9
4,140,864	-		Sama_3507	0.58	+0.3
4,140,864	-		Sama_3507	0.58	-0.1
4,140,864	-		Sama_3507	0.58	+0.6
4,140,945	+		Sama_3507	0.63	-1.0
4,140,945	+		Sama_3507	0.63	+0.1
4,140,945	+		Sama_3507	0.63	-0.1
4,140,945	+		Sama_3507	0.63	+0.3
4,140,945	+		Sama_3507	0.63	+1.2
4,140,945	+		Sama_3507	0.63	+0.7
4,140,945	+		Sama_3507	0.63	+0.2
4,140,945	+		Sama_3507	0.63	+1.0
4,140,945	+		Sama_3507	0.63	-0.8
4,140,945	+		Sama_3507	0.63	+0.7
4,140,945	+		Sama_3507	0.63	+0.0
4,140,945	+		Sama_3507	0.63	-0.5
4,140,945	+		Sama_3507	0.63	-0.2
4,140,945	+		Sama_3507	0.63	-0.1
4,140,945	+		Sama_3507	0.63	+0.9
4,140,945	+		Sama_3507	0.63	+0.3
4,140,946	-		Sama_3507	0.63	+1.6
4,140,946	-		Sama_3507	0.63	+1.3
4,140,946	-		Sama_3507	0.63	-1.6
4,140,946	-		Sama_3507	0.63	+0.9
4,140,946	-		Sama_3507	0.63	+0.8
4,140,946	-		Sama_3507	0.63	+0.3
4,140,946	-		Sama_3507	0.63	+0.5
4,140,946	-		Sama_3507	0.63	-0.9
4,140,946	-		Sama_3507	0.63	+3.3
4,140,946	-		Sama_3507	0.63	-0.8
4,140,946	-		Sama_3507	0.63	+1.6
4,140,946	-		Sama_3507	0.63	-0.3
4,140,946	-		Sama_3507	0.63	+0.1
4,141,002	+		Sama_3507	0.66	+0.5
4,141,002	+		Sama_3507	0.66	+0.5
4,141,002	+		Sama_3507	0.66	+0.4
4,141,003	-		Sama_3507	0.66	-0.7
4,141,003	-		Sama_3507	0.66	-0.1
4,141,003	-		Sama_3507	0.66	+0.7
4,141,003	-		Sama_3507	0.66	-0.0
4,141,003	-		Sama_3507	0.66	-0.2
4,141,003	-		Sama_3507	0.66	-1.7
4,141,114	+		Sama_3507	0.71	-0.6
4,141,114	+		Sama_3507	0.71	+0.3
4,141,115	-		Sama_3507	0.71	+1.2
4,141,115	-		Sama_3507	0.71	+0.2
4,141,115	-		Sama_3507	0.71	-0.3
4,141,210	+		Sama_3507	0.76	-1.0
4,141,210	+		Sama_3507	0.76	+0.1
4,141,211	-		Sama_3507	0.76	+0.5
4,141,235	+		Sama_3507	0.78	+1.0
4,141,235	+		Sama_3507	0.78	-0.0
4,141,235	+		Sama_3507	0.78	-0.1
4,141,236	-		Sama_3507	0.78	-2.0
4,141,236	-		Sama_3507	0.78	+0.7
4,141,236	-		Sama_3507	0.78	+1.3
4,141,236	-		Sama_3507	0.78	+0.9
4,141,236	-		Sama_3507	0.78	+0.2
4,141,236	-		Sama_3507	0.78	-0.9
4,141,236	-		Sama_3507	0.78	-1.0
4,141,236	-		Sama_3507	0.78	-0.1
4,141,297	-		Sama_3507	0.81	-0.2
4,141,305	+		Sama_3507	0.81	+0.9
4,141,305	+		Sama_3507	0.81	+0.2
4,141,306	-		Sama_3507	0.81	+1.6
4,141,306	-		Sama_3507	0.81	-0.0
4,141,306	-		Sama_3507	0.81	-0.0
4,141,306	-		Sama_3507	0.81	-0.6
4,141,329	+		Sama_3507	0.82	-0.1
4,141,330	-		Sama_3507	0.82	+0.7
4,141,427	+		Sama_3507	0.87	-0.2
4,141,428	-		Sama_3507	0.88	-0.3
4,141,525	+				-0.1
4,141,525	+				-1.3
4,141,525	+				+0.5
4,141,526	-				-0.1
4,141,526	-				-0.4
4,141,526	-				+0.2
4,141,526	-				-0.3
4,141,582	+				+0.1
4,141,675	+				-0.1
4,141,675	+				+0.4
4,141,721	+				-0.5
4,141,721	+				-2.0
4,141,722	-				-1.7
4,141,722	-				+0.9
4,141,726	+				-0.5
4,141,727	-				+0.5
4,141,781	+				+0.4
4,141,781	+				-0.2
4,141,829	+				+0.1
4,141,830	-				-0.4
4,141,833	-				-0.6
4,141,836	+				+0.3
4,141,836	+				+0.4
4,141,837	-				-0.7
4,141,892	-				-0.0
4,142,029	+				+0.8
4,142,029	+				+0.3
4,142,030	-				-0.2
4,142,090	-		Sama_3508	0.11	+0.1
4,142,090	-		Sama_3508	0.11	-0.3
4,142,126	+		Sama_3508	0.12	+0.9
4,142,126	+		Sama_3508	0.12	+0.6
4,142,126	+		Sama_3508	0.12	-1.3
4,142,126	+		Sama_3508	0.12	-0.4
4,142,126	+		Sama_3508	0.12	-0.2
4,142,126	+		Sama_3508	0.12	-0.3
4,142,126	+		Sama_3508	0.12	-0.9
4,142,126	+		Sama_3508	0.12	-1.5
4,142,126	+		Sama_3508	0.12	+0.5
4,142,126	+		Sama_3508	0.12	+0.2
4,142,126	+		Sama_3508	0.12	-0.4
4,142,126	+		Sama_3508	0.12	-1.8
4,142,126	+		Sama_3508	0.12	-0.0
4,142,126	+		Sama_3508	0.12	-1.9
4,142,126	+		Sama_3508	0.12	-0.4
4,142,126	+		Sama_3508	0.12	-1.3
4,142,126	+		Sama_3508	0.12	-0.8
4,142,126	+		Sama_3508	0.12	+0.6
4,142,126	+		Sama_3508	0.12	-1.1
4,142,127	-		Sama_3508	0.12	+0.3
4,142,127	-		Sama_3508	0.12	-1.5
4,142,127	-		Sama_3508	0.12	-0.3
4,142,127	-		Sama_3508	0.12	-0.2
4,142,127	-		Sama_3508	0.12	-1.0
4,142,127	-		Sama_3508	0.12	+0.1
4,142,127	-		Sama_3508	0.12	-1.5
4,142,127	-		Sama_3508	0.12	-0.1
4,142,127	-		Sama_3508	0.12	-0.7
4,142,127	-		Sama_3508	0.12	-0.4
4,142,127	-		Sama_3508	0.12	-0.4
4,142,127	-		Sama_3508	0.12	-0.5
4,142,127	-		Sama_3508	0.12	-1.0
4,142,127	-		Sama_3508	0.12	+1.3
4,142,132	+		Sama_3508	0.13	+1.7
4,142,132	+		Sama_3508	0.13	-0.4
4,142,133	-		Sama_3508	0.13	-1.2
4,142,133	-		Sama_3508	0.13	-1.6
4,142,133	-		Sama_3508	0.13	+0.5
4,142,251	+		Sama_3508	0.18	-0.0
4,142,251	+		Sama_3508	0.18	-0.0
4,142,252	-		Sama_3508	0.18	-0.6
4,142,315	-		Sama_3508	0.21	-1.3
4,142,372	-		Sama_3508	0.23	+1.0
4,142,372	-		Sama_3508	0.23	-0.7
4,142,377	+		Sama_3508	0.23	-1.1
4,142,378	-		Sama_3508	0.23	+0.3
4,142,386	+		Sama_3508	0.24	+0.4
4,142,387	-		Sama_3508	0.24	+0.3
4,142,448	+		Sama_3508	0.26	-0.8
4,142,448	+		Sama_3508	0.26	+1.6
4,142,449	-		Sama_3508	0.26	-0.5
4,142,449	-		Sama_3508	0.26	-0.2
4,142,449	-		Sama_3508	0.26	+0.2
4,142,598	+		Sama_3508	0.33	+0.1
4,142,672	-		Sama_3508	0.36	-0.5
4,142,672	-		Sama_3508	0.36	-1.2
4,142,693	+		Sama_3508	0.37	-0.1
4,142,693	+		Sama_3508	0.37	-0.4
4,142,757	+		Sama_3508	0.39	+0.6
4,142,757	+		Sama_3508	0.39	-1.5
4,142,758	-		Sama_3508	0.39	-0.0
4,142,758	-		Sama_3508	0.39	-0.4
4,142,758	-		Sama_3508	0.39	-0.1
4,142,758	-		Sama_3508	0.39	+0.3
4,142,758	-		Sama_3508	0.39	+0.0
4,142,898	+		Sama_3508	0.45	-0.7
4,142,898	+		Sama_3508	0.45	-0.4
4,142,921	+		Sama_3508	0.46	-1.2
4,142,921	+		Sama_3508	0.46	+0.7
4,142,921	+		Sama_3508	0.46	-0.9
4,142,921	+		Sama_3508	0.46	-0.9
4,142,921	+		Sama_3508	0.46	+0.0
4,142,921	+		Sama_3508	0.46	+2.0
4,142,921	+		Sama_3508	0.46	-0.3
4,142,921	+		Sama_3508	0.46	-0.6
4,142,921	+		Sama_3508	0.46	+0.7
4,142,921	+		Sama_3508	0.46	-1.1
4,142,921	+		Sama_3508	0.46	-0.7
4,142,922	-		Sama_3508	0.47	+1.7
4,142,922	-		Sama_3508	0.47	-0.7
4,142,922	-		Sama_3508	0.47	+0.6
4,142,922	-		Sama_3508	0.47	-1.2
4,142,922	-		Sama_3508	0.47	-0.8
4,142,922	-		Sama_3508	0.47	-0.4
4,142,922	-		Sama_3508	0.47	-2.2
4,142,922	-		Sama_3508	0.47	-0.6
4,143,043	+		Sama_3508	0.52	-0.2
4,143,043	+		Sama_3508	0.52	-1.4
4,143,043	+		Sama_3508	0.52	-1.5
4,143,043	+		Sama_3508	0.52	-0.4
4,143,043	+		Sama_3508	0.52	-0.2
4,143,044	-		Sama_3508	0.52	-0.7
4,143,044	-		Sama_3508	0.52	-1.7
4,143,044	-		Sama_3508	0.52	-0.3
4,143,044	-		Sama_3508	0.52	-0.1
4,143,056	-		Sama_3508	0.52	+0.6
4,143,077	-		Sama_3508	0.53	+0.9
4,143,292	+		Sama_3508	0.62	+0.1
4,143,293	-		Sama_3508	0.62	-1.0
4,143,326	-		Sama_3508	0.64	-1.0
4,143,326	-		Sama_3508	0.64	-1.0
4,143,326	-		Sama_3508	0.64	+1.2
4,143,334	+		Sama_3508	0.64	+0.7
4,143,335	-		Sama_3508	0.64	+0.1
4,143,361	+		Sama_3508	0.65	-1.3
4,143,362	-		Sama_3508	0.65	+0.1
4,143,362	-		Sama_3508	0.65	+0.4
4,143,420	+		Sama_3508	0.68	-0.7
4,143,420	+		Sama_3508	0.68	+0.7
4,143,420	+		Sama_3508	0.68	-0.4
4,143,420	+		Sama_3508	0.68	-0.7
4,143,420	+		Sama_3508	0.68	-1.5
4,143,421	-		Sama_3508	0.68	+0.5
4,143,421	-		Sama_3508	0.68	-0.5
4,143,421	-		Sama_3508	0.68	-2.2
4,143,552	+		Sama_3508	0.73	-0.4
4,143,552	+		Sama_3508	0.73	-1.5
4,143,552	+		Sama_3508	0.73	-1.0
4,143,552	+		Sama_3508	0.73	+0.1
4,143,553	-		Sama_3508	0.74	-0.9
4,143,553	-		Sama_3508	0.74	+0.2
4,143,553	-		Sama_3508	0.74	-0.8
4,143,565	+		Sama_3508	0.74	+0.3
4,143,566	-		Sama_3508	0.74	+0.5
4,143,566	-		Sama_3508	0.74	-0.7
4,143,685	-		Sama_3508	0.79	-0.4
4,143,698	+		Sama_3508	0.80	-1.9
4,143,698	+		Sama_3508	0.80	-0.4
4,143,698	+		Sama_3508	0.80	+0.3
4,143,698	+		Sama_3508	0.80	-1.3
4,143,739	+		Sama_3508	0.81	-1.4
4,143,739	+		Sama_3508	0.81	-0.8
4,143,739	+		Sama_3508	0.81	+0.2
4,143,853	+		Sama_3508	0.86	-0.0
4,143,854	-		Sama_3508	0.86	-1.3
4,143,855	+		Sama_3508	0.86	+0.3
4,143,855	+		Sama_3508	0.86	-0.5
4,143,856	-		Sama_3508	0.86	-0.6
4,143,864	+		Sama_3508	0.87	+2.3
4,143,864	+		Sama_3508	0.87	-0.6
4,143,865	-		Sama_3508	0.87	-0.6
4,143,865	-		Sama_3508	0.87	+0.6
4,143,905	-		Sama_3508	0.89	-0.5
4,143,990	+				-0.1
4,143,991	-				+0.1
4,143,991	-				-0.5
4,144,012	+				-0.8
4,144,052	-				+1.2
4,144,160	-				+0.1
4,144,179	-				-1.2
4,144,184	+				-1.7
4,144,184	+				-0.0
4,144,184	+				-0.8
4,144,185	-				+1.0
4,144,185	-				+0.7
4,144,185	-				+0.1
4,144,191	+				-1.3
4,144,191	+				+0.3
4,144,191	+				+0.0
4,144,191	+				+0.8
4,144,191	+				-0.6
4,144,191	+				+0.8
4,144,191	+				-1.5
4,144,191	+				-1.3
4,144,192	-				-0.5
4,144,192	-				-0.4
4,144,192	-				-0.0
4,144,192	-				+0.2
4,144,192	-				-0.5
4,144,201	+				-0.3
4,144,202	-				-0.1
4,144,265	+				+0.7
4,144,266	-				+0.6
4,144,266	-				+1.0
4,144,266	-				-1.1
4,144,266	-				+0.5
4,144,297	+				+0.4
4,144,297	+				-0.0
4,144,297	+				-1.2
4,144,297	+				+1.1
4,144,298	-				-0.0
4,144,298	-				-0.8
4,144,298	-				+0.7
4,144,298	-				+0.3
4,144,298	-				+0.4
4,144,324	+				+0.3
4,144,340	+				+1.0
4,144,341	-				-0.6
4,144,428	+		Sama_3509	0.27	-0.6
4,144,428	+		Sama_3509	0.27	+0.7
4,144,429	-		Sama_3509	0.27	-0.4
4,144,429	-		Sama_3509	0.27	-0.3
4,144,429	-		Sama_3509	0.27	+0.0
4,144,436	+		Sama_3509	0.28	-0.1
4,144,436	+		Sama_3509	0.28	-1.1
4,144,436	+		Sama_3509	0.28	-0.2
4,144,437	-		Sama_3509	0.28	+0.1
4,144,437	-		Sama_3509	0.28	+0.2
4,144,437	-		Sama_3509	0.28	-0.0
4,144,437	-		Sama_3509	0.28	-0.4
4,144,437	-		Sama_3509	0.28	-0.0
4,144,437	-		Sama_3509	0.28	-0.8
4,144,437	-		Sama_3509	0.28	+1.2
4,144,438	+		Sama_3509	0.29	-1.3
4,144,438	+		Sama_3509	0.29	+0.5
4,144,438	+		Sama_3509	0.29	-0.0
4,144,438	+		Sama_3509	0.29	+0.5
4,144,438	+		Sama_3509	0.29	+2.3
4,144,438	+		Sama_3509	0.29	+0.5
4,144,438	+		Sama_3509	0.29	+0.2
4,144,438	+		Sama_3509	0.29	+0.2
4,144,439	-		Sama_3509	0.29	-0.3
4,144,439	-		Sama_3509	0.29	+0.1
4,144,439	-		Sama_3509	0.29	+0.1
4,144,439	-		Sama_3509	0.29	-0.7
4,144,455	+		Sama_3509	0.32	+0.6
4,144,455	+		Sama_3509	0.32	+1.1
4,144,455	+		Sama_3509	0.32	+0.2
4,144,456	-		Sama_3509	0.32	+0.9
4,144,456	-		Sama_3509	0.32	+1.9
4,144,456	-		Sama_3509	0.32	+0.3
4,144,456	-		Sama_3509	0.32	+1.3
4,144,456	-		Sama_3509	0.32	+0.5
4,144,456	-		Sama_3509	0.32	+0.9
4,144,456	-		Sama_3509	0.32	-0.0
4,144,466	+		Sama_3509	0.34	-0.2
4,144,467	-		Sama_3509	0.34	-0.9
4,144,467	-		Sama_3509	0.34	-0.8
4,144,467	-		Sama_3509	0.34	-0.3
4,144,467	-		Sama_3509	0.34	-0.1
4,144,559	-		Sama_3509	0.53	+0.3
4,144,571	+		Sama_3509	0.55	+1.6
4,144,597	+		Sama_3509	0.60	-0.7
4,144,598	-		Sama_3509	0.61	+1.1
4,144,614	+		Sama_3509	0.64	-0.6
4,144,615	-		Sama_3509	0.64	+0.1
4,144,615	-		Sama_3509	0.64	-1.5
4,144,615	-		Sama_3509	0.64	+2.3
4,144,615	-		Sama_3509	0.64	+0.1
4,144,639	+		Sama_3509	0.69	-0.4
4,144,639	+		Sama_3509	0.69	-2.1
4,144,639	+		Sama_3509	0.69	-0.0
4,144,639	+		Sama_3509	0.69	-0.9
4,144,640	-		Sama_3509	0.69	-1.2
4,144,640	-		Sama_3509	0.69	+0.5
4,144,643	+		Sama_3509	0.70	+0.4
4,144,643	+		Sama_3509	0.70	-0.4
4,144,643	+		Sama_3509	0.70	+0.3
4,144,643	+		Sama_3509	0.70	+0.3
4,144,643	+		Sama_3509	0.70	+2.9
4,144,643	+		Sama_3509	0.70	-0.3
4,144,643	+		Sama_3509	0.70	-0.1
4,144,644	-		Sama_3509	0.70	-0.5
4,144,644	-		Sama_3509	0.70	+0.1
4,144,644	-		Sama_3509	0.70	+0.6
4,144,644	-		Sama_3509	0.70	-1.7
4,144,644	-		Sama_3509	0.70	+0.2
4,144,644	-		Sama_3509	0.70	+0.6
4,144,644	-		Sama_3509	0.70	+0.3
4,144,646	-		Sama_3509	0.70	-0.2
4,144,714	+		Sama_3509	0.84	-0.1
4,144,714	+		Sama_3509	0.84	+0.1
4,144,715	-		Sama_3509	0.84	+0.2
4,144,729	+		Sama_3509	0.87	-1.4
4,144,730	-		Sama_3509	0.87	+0.1
4,144,730	-		Sama_3509	0.87	+0.4
4,144,730	-		Sama_3509	0.87	+1.5
4,144,770	-				-0.8
4,144,797	+				+0.9
4,144,797	+				+0.2
4,144,798	-				+0.3
4,144,876	+				-0.5
4,144,886	+				+0.1
4,144,912	-				+0.3
4,144,912	-				+0.0
4,144,934	-				+1.7
4,144,993	+				+0.7
4,144,993	+				+0.7
4,144,993	+				+1.1
4,144,993	+				-0.7
4,144,993	+				+1.1
4,144,994	-				-0.7
4,144,994	-				+0.8
4,144,994	-				+1.4
4,144,994	-				-0.5
4,145,037	+				+0.5
4,145,037	+				+0.7
4,145,037	+				-0.2
4,145,037	+				-1.7
4,145,037	+				+1.2
4,145,037	+				-1.3
4,145,037	+				+0.1
4,145,038	-				+1.0
4,145,038	-				+0.8
4,145,038	-				+0.9
4,145,038	-				-0.0
4,145,038	-				+0.3
4,145,038	-				-0.6
4,145,038	-				+0.2
4,145,038	-				+1.1
4,145,038	-				+1.5
4,145,066	-				+0.4
4,145,150	+	ompR	Sama_3510	0.21	+0.3
4,145,150	+	ompR	Sama_3510	0.21	+0.7
4,145,150	+	ompR	Sama_3510	0.21	+1.1
4,145,150	+	ompR	Sama_3510	0.21	+0.6
4,145,151	-	ompR	Sama_3510	0.21	+0.0
4,145,151	-	ompR	Sama_3510	0.21	+1.3