Strain Fitness in Shewanella amazonensis SB2B around Sama_3227

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
3,819,211	+		Sama_3225	0.54	-2.3
3,819,211	+		Sama_3225	0.54	-1.5
3,819,211	+		Sama_3225	0.54	-0.1
3,819,229	+		Sama_3225	0.56	-0.8
3,819,325	+		Sama_3225	0.66	-2.1
3,819,325	+		Sama_3225	0.66	-1.3
3,819,325	+		Sama_3225	0.66	+0.6
3,819,350	+		Sama_3225	0.69	-2.8
3,819,350	+		Sama_3225	0.69	-0.4
3,819,350	+		Sama_3225	0.69	-0.4
3,819,481	+		Sama_3225	0.82	-2.5
3,819,481	+		Sama_3225	0.82	-1.1
3,819,490	+		Sama_3225	0.83	-0.8
3,819,490	+		Sama_3225	0.83	+0.5
3,819,528	+		Sama_3225	0.87	-0.6
3,819,538	+		Sama_3225	0.88	-1.4
3,819,538	+		Sama_3225	0.88	+0.6
3,819,638	+				-0.9
3,819,641	+				-0.8
3,819,641	+				-0.1
3,819,641	+				-0.4
3,819,641	+				-2.3
3,819,641	+				-1.8
3,819,641	+				-2.8
3,819,646	+				-2.7
3,819,646	+				-1.0
3,819,646	+				-2.8
3,819,646	+				-1.9
3,819,646	+				-1.3
3,819,647	-				-0.8
3,819,652	+				-0.8
3,819,664	+				-1.4
3,819,973	-				-1.1
3,819,973	-				-1.6
3,819,986	+				-1.3
3,819,987	-				+0.1
3,819,987	-				-1.1
3,819,991	+				-0.6
3,819,991	+				-1.3
3,819,991	+				-0.8
3,819,991	+				-1.0
3,819,991	+				-0.5
3,819,992	-				-1.4
3,819,992	-				-1.0
3,819,992	-				-0.2
3,819,992	-				-2.3
3,819,992	-				+0.4
3,819,992	-				-1.0
3,819,992	-				+0.0
3,819,992	-				-0.8
3,819,992	-				-2.7
3,819,992	-				+0.7
3,820,011	+				-1.9
3,820,011	+				-1.1
3,820,018	-				+0.3
3,820,056	+				+1.5
3,820,056	+				+2.1
3,820,056	+				-0.1
3,820,057	-				+0.2
3,820,057	-				+0.3
3,820,068	+				-1.1
3,820,068	+				+0.0
3,820,068	+				+0.8
3,820,068	+				-0.6
3,820,069	-				+0.2
3,820,069	-				+0.6
3,820,069	-				+1.2
3,820,069	-				-0.7
3,820,069	-				-0.3
3,820,069	-				-0.2
3,820,075	+				+0.3
3,820,075	+				+1.5
3,820,075	+				-0.1
3,820,075	+				-0.6
3,820,076	-				+0.6
3,820,076	-				-0.3
3,820,076	-				-1.0
3,820,076	-				+0.3
3,820,076	-				-0.1
3,820,076	-				+1.6
3,820,079	+				+0.6
3,820,141	+				+0.4
3,820,141	+				+0.9
3,820,141	+				-0.1
3,820,142	-				+0.0
3,820,142	-				+0.5
3,820,142	-				-0.2
3,820,166	+				+0.3
3,820,166	+				-1.2
3,820,166	+				+0.4
3,820,166	+				-0.3
3,820,166	+				+0.4
3,820,166	+				-0.7
3,820,166	+				+0.6
3,820,166	+				+1.4
3,820,167	-				-0.4
3,820,167	-				-0.3
3,820,167	-				+0.8
3,820,185	+				+1.4
3,820,196	+				+0.6
3,820,196	+				-0.7
3,820,196	+				+0.0
3,820,197	-				-0.9
3,820,197	-				+0.2
3,820,197	-				+0.3
3,820,197	-				+0.5
3,820,197	-				-0.1
3,820,197	-				+0.1
3,820,202	+		Sama_3227	0.10	-1.3
3,820,202	+		Sama_3227	0.10	-0.8
3,820,202	+		Sama_3227	0.10	+0.3
3,820,202	+		Sama_3227	0.10	+0.9
3,820,202	+		Sama_3227	0.10	-0.2
3,820,202	+		Sama_3227	0.10	-0.7
3,820,203	-		Sama_3227	0.11	+0.9
3,820,203	-		Sama_3227	0.11	-0.3
3,820,203	-		Sama_3227	0.11	+1.1
3,820,203	-		Sama_3227	0.11	+0.2
3,820,203	-		Sama_3227	0.11	+0.5
3,820,203	-		Sama_3227	0.11	+0.5
3,820,203	-		Sama_3227	0.11	-0.5
3,820,203	-		Sama_3227	0.11	-0.2
3,820,203	-		Sama_3227	0.11	-0.5
3,820,203	-		Sama_3227	0.11	-0.0
3,820,203	-		Sama_3227	0.11	+0.4
3,820,203	-		Sama_3227	0.11	-0.3
3,820,203	-		Sama_3227	0.11	-1.3
3,820,206	+		Sama_3227	0.11	+0.7
3,820,206	+		Sama_3227	0.11	-0.9
3,820,206	+		Sama_3227	0.11	-1.0
3,820,206	+		Sama_3227	0.11	-0.1
3,820,207	-		Sama_3227	0.12	-1.6
3,820,207	-		Sama_3227	0.12	-0.1
3,820,207	-		Sama_3227	0.12	-0.2
3,820,207	-		Sama_3227	0.12	-1.3
3,820,221	+		Sama_3227	0.15	+0.2
3,820,221	+		Sama_3227	0.15	+0.2
3,820,229	+		Sama_3227	0.17	+0.3
3,820,229	+		Sama_3227	0.17	+0.0
3,820,229	+		Sama_3227	0.17	-0.0
3,820,229	+		Sama_3227	0.17	-0.0
3,820,230	-		Sama_3227	0.17	+0.5
3,820,230	-		Sama_3227	0.17	+0.7
3,820,230	-		Sama_3227	0.17	-0.4
3,820,301	+		Sama_3227	0.35	-0.9
3,820,301	+		Sama_3227	0.35	+0.6
3,820,309	+		Sama_3227	0.37	-1.1
3,820,316	+		Sama_3227	0.39	+0.8
3,820,342	-		Sama_3227	0.46	+0.7
3,820,379	+		Sama_3227	0.55	+0.0
3,820,379	+		Sama_3227	0.55	-0.7
3,820,395	+		Sama_3227	0.59	+0.8
3,820,455	+		Sama_3227	0.74	+1.0
3,820,455	+		Sama_3227	0.74	+1.2
3,820,455	+		Sama_3227	0.74	+1.0
3,820,456	-		Sama_3227	0.74	+0.1
3,820,478	-		Sama_3227	0.80	+1.4
3,820,478	-		Sama_3227	0.80	-0.1
3,820,478	-		Sama_3227	0.80	+0.3
3,820,530	+				-0.1
3,820,556	+				+0.9
3,820,556	+				+0.3
3,820,556	+				-0.0
3,820,557	-				-1.6
3,820,557	-				-1.4
3,820,557	-				-0.9
3,820,568	-				-1.3
3,820,583	+				+0.8
3,820,583	+				-1.5
3,820,584	-				+2.2
3,820,600	+				+1.5
3,820,600	+				-0.6
3,820,600	+				-0.9
3,820,600	+				+0.2
3,820,601	-				-0.1
3,820,601	-				+0.6
3,820,601	-				-1.8
3,820,601	-				+0.2
3,820,601	-				+0.3
3,820,613	+				-0.6
3,820,655	+				+3.2
3,820,655	+				-0.3
3,820,655	+				+0.3
3,820,655	+				+1.2
3,820,655	+				-0.8
3,820,655	+				-1.1
3,820,655	+				-0.0
3,820,655	+				+0.3
3,820,655	+				-0.4
3,820,655	+				+0.4
3,820,655	+				-0.6
3,820,655	+				+0.2
3,820,655	+				-0.8
3,820,655	+				+0.1
3,820,655	+				+1.0
3,820,655	+				-0.5
3,820,656	-				+0.2
3,820,656	-				-0.5
3,820,656	-				+0.4
3,820,656	-				+1.4
3,820,656	-				+0.2
3,820,656	-				+1.9
3,820,656	-				-0.4
3,820,656	-				+1.8
3,820,656	-				+0.2
3,820,656	-				-0.5
3,820,656	-				-0.8
3,820,661	+				-2.1
3,820,662	-				-0.1
3,820,662	-				-0.2
3,820,737	+				+0.3
3,820,737	+				-0.3
3,820,737	+				+0.1
3,820,737	+				+0.0
3,820,737	+				-0.1
3,820,738	-				+1.7
3,820,738	-				-0.3
3,820,738	-				+0.5
3,820,826	+				+0.5
3,820,833	+				+0.5
3,820,833	+				+0.6
3,820,833	+				+0.5
3,820,833	+				-0.7
3,820,834	-				-0.2
3,820,834	-				-0.2
3,820,834	-				-0.4
3,820,834	-				+0.1
3,820,868	-				+0.2
3,820,868	-				-0.1
3,820,868	-				+0.2
3,820,929	-				+1.8
3,820,929	-				-1.1
3,820,929	-				-0.1
3,820,929	-				+0.5
3,820,929	-				+0.3
3,820,985	+		Sama_3228	0.15	+0.1
3,820,985	+		Sama_3228	0.15	-0.0
3,820,986	-		Sama_3228	0.15	-1.4
3,821,014	+		Sama_3228	0.17	+0.5
3,821,033	+		Sama_3228	0.19	+0.7
3,821,033	+		Sama_3228	0.19	+0.5
3,821,033	+		Sama_3228	0.19	-0.0
3,821,034	-		Sama_3228	0.19	-0.2
3,821,034	-		Sama_3228	0.19	-0.4
3,821,034	-		Sama_3228	0.19	-0.5
3,821,034	-		Sama_3228	0.19	+0.7
3,821,034	-		Sama_3228	0.19	+0.8
3,821,068	+		Sama_3228	0.22	+1.0
3,821,068	+		Sama_3228	0.22	-1.5
3,821,069	-		Sama_3228	0.22	+1.2
3,821,069	-		Sama_3228	0.22	+0.6
3,821,086	+		Sama_3228	0.23	-0.4
3,821,087	-		Sama_3228	0.23	-1.4
3,821,090	+		Sama_3228	0.24	+0.0
3,821,155	+		Sama_3228	0.29	-0.2
3,821,156	-		Sama_3228	0.29	+0.2
3,821,156	-		Sama_3228	0.29	-0.5
3,821,171	+		Sama_3228	0.31	-1.4
3,821,171	+		Sama_3228	0.31	+0.0
3,821,172	-		Sama_3228	0.31	+0.5
3,821,172	-		Sama_3228	0.31	-1.8
3,821,266	-		Sama_3228	0.39	-1.4
3,821,431	+		Sama_3228	0.53	-1.1
3,821,518	+		Sama_3228	0.61	+0.2