Strain Fitness in Shewanella amazonensis SB2B around Sama_3148

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
3,735,382	+				+0.9
3,735,383	-				+0.8
3,735,383	-				+0.3
3,735,452	+		Sama_3147	0.11	+0.6
3,735,452	+		Sama_3147	0.11	+1.7
3,735,453	-		Sama_3147	0.12	-1.6
3,735,453	-		Sama_3147	0.12	+0.0
3,735,490	+		Sama_3147	0.16	+0.6
3,735,494	+		Sama_3147	0.16	-1.1
3,735,494	+		Sama_3147	0.16	+0.6
3,735,494	+		Sama_3147	0.16	+1.0
3,735,494	+		Sama_3147	0.16	+0.2
3,735,494	+		Sama_3147	0.16	-0.2
3,735,494	+		Sama_3147	0.16	-0.4
3,735,495	-		Sama_3147	0.16	-0.7
3,735,495	-		Sama_3147	0.16	+0.2
3,735,495	-		Sama_3147	0.16	-0.6
3,735,495	-		Sama_3147	0.16	+0.1
3,735,495	-		Sama_3147	0.16	-0.4
3,735,495	-		Sama_3147	0.16	+0.2
3,735,495	-		Sama_3147	0.16	+0.9
3,735,620	+		Sama_3147	0.30	+0.5
3,735,620	+		Sama_3147	0.30	-0.7
3,735,620	+		Sama_3147	0.30	+0.0
3,735,620	+		Sama_3147	0.30	+0.3
3,735,620	+		Sama_3147	0.30	-0.1
3,735,621	-		Sama_3147	0.30	+0.2
3,735,621	-		Sama_3147	0.30	-0.2
3,735,632	+		Sama_3147	0.32	-0.3
3,735,632	+		Sama_3147	0.32	-0.8
3,735,632	+		Sama_3147	0.32	-0.7
3,735,632	+		Sama_3147	0.32	+2.2
3,735,632	+		Sama_3147	0.32	-0.3
3,735,633	-		Sama_3147	0.32	-0.3
3,735,698	+		Sama_3147	0.39	-0.7
3,735,698	+		Sama_3147	0.39	+1.0
3,735,699	-		Sama_3147	0.39	+1.2
3,735,699	-		Sama_3147	0.39	+0.0
3,735,767	+		Sama_3147	0.47	+0.6
3,735,767	+		Sama_3147	0.47	+0.4
3,735,767	+		Sama_3147	0.47	+1.2
3,735,767	+		Sama_3147	0.47	-0.1
3,735,774	+		Sama_3147	0.48	-1.0
3,735,775	-		Sama_3147	0.48	-0.2
3,735,792	+		Sama_3147	0.50	-0.1
3,735,792	+		Sama_3147	0.50	-0.0
3,735,793	-		Sama_3147	0.50	-0.1
3,735,807	+		Sama_3147	0.51	+0.2
3,735,807	+		Sama_3147	0.51	+0.2
3,735,807	+		Sama_3147	0.51	-0.6
3,735,808	-		Sama_3147	0.51	+0.3
3,735,817	+		Sama_3147	0.52	+0.7
3,735,879	+		Sama_3147	0.59	+1.4
3,735,879	+		Sama_3147	0.59	+0.3
3,735,879	+		Sama_3147	0.59	+0.2
3,735,880	-		Sama_3147	0.59	+0.2
3,735,880	-		Sama_3147	0.59	-0.7
3,736,033	+		Sama_3147	0.77	+0.9
3,736,034	-		Sama_3147	0.77	-0.1
3,736,039	+		Sama_3147	0.77	-1.3
3,736,039	+		Sama_3147	0.77	+0.6
3,736,040	-		Sama_3147	0.77	-0.4
3,736,041	+		Sama_3147	0.78	-0.1
3,736,041	+		Sama_3147	0.78	+1.5
3,736,041	+		Sama_3147	0.78	+0.1
3,736,041	+		Sama_3147	0.78	-0.9
3,736,041	+		Sama_3147	0.78	+1.9
3,736,041	+		Sama_3147	0.78	+0.4
3,736,041	+		Sama_3147	0.78	-0.4
3,736,042	-		Sama_3147	0.78	-0.0
3,736,042	-		Sama_3147	0.78	+0.2
3,736,042	-		Sama_3147	0.78	+0.5
3,736,080	+		Sama_3147	0.82	+0.4
3,736,080	+		Sama_3147	0.82	-0.4
3,736,080	+		Sama_3147	0.82	-0.4
3,736,081	-		Sama_3147	0.82	+0.7
3,736,081	-		Sama_3147	0.82	+0.0
3,736,082	+		Sama_3147	0.82	+2.2
3,736,082	+		Sama_3147	0.82	+0.6
3,736,082	+		Sama_3147	0.82	+0.6
3,736,083	-		Sama_3147	0.82	-0.4
3,736,083	-		Sama_3147	0.82	-0.1
3,736,083	-		Sama_3147	0.82	+0.0
3,736,083	-		Sama_3147	0.82	-1.2
3,736,083	-		Sama_3147	0.82	+0.9
3,736,083	-		Sama_3147	0.82	-0.5
3,736,141	+		Sama_3147	0.89	-0.4
3,736,141	+		Sama_3147	0.89	-0.1
3,736,147	+		Sama_3147	0.89	+1.1
3,736,148	-		Sama_3147	0.90	+0.3
3,736,150	+		Sama_3147	0.90	+0.3
3,736,151	-		Sama_3147	0.90	-0.4
3,736,151	-		Sama_3147	0.90	-1.5
3,736,174	+				-0.3
3,736,174	+				+0.8
3,736,174	+				+0.0
3,736,174	+				+0.2
3,736,174	+				-0.6
3,736,174	+				-0.2
3,736,176	+				-0.6
3,736,176	+				+1.6
3,736,176	+				+0.2
3,736,176	+				-0.6
3,736,176	+				-0.1
3,736,176	+				+0.3
3,736,176	+				-0.7
3,736,176	+				+0.3
3,736,176	+				-0.4
3,736,176	+				-1.2
3,736,176	+				+0.3
3,736,176	+				+0.2
3,736,177	-				-0.2
3,736,177	-				+0.3
3,736,177	-				+0.1
3,736,177	-				-0.4
3,736,177	-				-0.0
3,736,177	-				-0.4
3,736,177	-				-0.5
3,736,177	-				-2.0
3,736,183	+				-0.4
3,736,183	+				+0.9
3,736,183	+				+0.6
3,736,183	+				-1.7
3,736,184	-				+0.5
3,736,247	+				+0.8
3,736,248	-				-0.1
3,736,248	-				-0.2
3,736,280	-				-0.0
3,736,294	+				-0.8
3,736,294	+				+0.3
3,736,294	+				-0.4
3,736,309	+				-0.8
3,736,326	+				-0.4
3,736,326	+				+1.3
3,736,326	+				+0.2
3,736,326	+				+0.6
3,736,326	+				-1.2
3,736,326	+				+0.1
3,736,327	-				+0.8
3,736,327	-				-0.7
3,736,327	-				-1.1
3,736,327	-				-0.5
3,736,362	-				-1.2
3,736,362	-				-0.1
3,736,362	-				+0.2
3,736,482	+		Sama_3148	0.13	+0.3
3,736,483	-		Sama_3148	0.14	-2.2
3,736,497	+		Sama_3148	0.15	-0.8
3,736,498	-		Sama_3148	0.15	-1.8
3,736,527	+		Sama_3148	0.19	-1.2
3,736,528	-		Sama_3148	0.19	-1.7
3,736,528	-		Sama_3148	0.19	-0.4
3,736,531	+		Sama_3148	0.19	+0.0
3,736,531	+		Sama_3148	0.19	-1.6
3,736,531	+		Sama_3148	0.19	+1.2
3,736,531	+		Sama_3148	0.19	-1.0
3,736,531	+		Sama_3148	0.19	-1.4
3,736,531	+		Sama_3148	0.19	-0.1
3,736,531	+		Sama_3148	0.19	-2.3
3,736,531	+		Sama_3148	0.19	-0.8
3,736,531	+		Sama_3148	0.19	-0.7
3,736,531	+		Sama_3148	0.19	-1.2
3,736,531	+		Sama_3148	0.19	-0.8
3,736,532	-		Sama_3148	0.19	-1.2
3,736,532	-		Sama_3148	0.19	-1.8
3,736,532	-		Sama_3148	0.19	-2.0
3,736,532	-		Sama_3148	0.19	+0.7
3,736,532	-		Sama_3148	0.19	-0.4
3,736,532	-		Sama_3148	0.19	-1.7
3,736,532	-		Sama_3148	0.19	-0.8
3,736,532	-		Sama_3148	0.19	+0.6
3,736,543	+		Sama_3148	0.20	-1.5
3,736,544	-		Sama_3148	0.21	-1.3
3,736,544	-		Sama_3148	0.21	-1.2
3,736,544	-		Sama_3148	0.21	-1.7
3,736,544	-		Sama_3148	0.21	+0.2
3,736,575	+		Sama_3148	0.24	-1.4
3,736,575	+		Sama_3148	0.24	-1.4
3,736,575	+		Sama_3148	0.24	-0.2
3,736,575	+		Sama_3148	0.24	-2.2
3,736,575	+		Sama_3148	0.24	+0.2
3,736,575	+		Sama_3148	0.24	-1.5
3,736,575	+		Sama_3148	0.24	-0.4
3,736,575	+		Sama_3148	0.24	-2.8
3,736,575	+		Sama_3148	0.24	-0.8
3,736,575	+		Sama_3148	0.24	-0.2
3,736,575	+		Sama_3148	0.24	-0.2
3,736,575	+		Sama_3148	0.24	-1.0
3,736,575	+		Sama_3148	0.24	-0.4
3,736,575	+		Sama_3148	0.24	-1.4
3,736,575	+		Sama_3148	0.24	+0.2
3,736,575	+		Sama_3148	0.24	-0.6
3,736,575	+		Sama_3148	0.24	+0.2
3,736,575	+		Sama_3148	0.24	-0.4
3,736,576	-		Sama_3148	0.24	-0.7
3,736,576	-		Sama_3148	0.24	-1.4
3,736,576	-		Sama_3148	0.24	-1.4
3,736,576	-		Sama_3148	0.24	+1.2
3,736,576	-		Sama_3148	0.24	-1.7
3,736,576	-		Sama_3148	0.24	-2.3
3,736,576	-		Sama_3148	0.24	-1.8
3,736,576	-		Sama_3148	0.24	-0.1
3,736,576	-		Sama_3148	0.24	+0.6
3,736,576	-		Sama_3148	0.24	+0.2
3,736,576	-		Sama_3148	0.24	-2.6
3,736,576	-		Sama_3148	0.24	-1.5
3,736,576	-		Sama_3148	0.24	-0.8
3,736,576	-		Sama_3148	0.24	-1.7
3,736,576	-		Sama_3148	0.24	-0.5
3,736,576	-		Sama_3148	0.24	-2.2
3,736,576	-		Sama_3148	0.24	-0.7
3,736,612	-		Sama_3148	0.28	-0.7
3,736,627	+		Sama_3148	0.30	-0.7
3,736,627	+		Sama_3148	0.30	-0.3
3,736,627	+		Sama_3148	0.30	-1.3
3,736,627	+		Sama_3148	0.30	-0.0
3,736,628	-		Sama_3148	0.30	-0.0
3,736,628	-		Sama_3148	0.30	-1.4
3,736,681	-		Sama_3148	0.36	-0.8
3,736,764	+		Sama_3148	0.46	-1.2
3,736,764	+		Sama_3148	0.46	-1.8
3,736,764	+		Sama_3148	0.46	-0.6
3,736,765	-		Sama_3148	0.46	-0.4
3,736,765	-		Sama_3148	0.46	-0.8
3,736,770	-		Sama_3148	0.47	+0.3
3,736,775	+		Sama_3148	0.47	+0.3
3,736,775	+		Sama_3148	0.47	+1.2
3,736,775	+		Sama_3148	0.47	-0.0
3,736,775	+		Sama_3148	0.47	-1.2
3,736,775	+		Sama_3148	0.47	+0.4
3,736,775	+		Sama_3148	0.47	-1.7
3,736,775	+		Sama_3148	0.47	+1.2
3,736,776	-		Sama_3148	0.47	-1.0
3,736,776	-		Sama_3148	0.47	+0.6
3,736,776	-		Sama_3148	0.47	-0.5
3,736,776	-		Sama_3148	0.47	-0.8
3,736,779	+		Sama_3148	0.48	-0.6
3,736,779	+		Sama_3148	0.48	-1.4
3,736,779	+		Sama_3148	0.48	-0.4
3,736,779	+		Sama_3148	0.48	+0.3
3,736,780	-		Sama_3148	0.48	-1.8
3,736,780	-		Sama_3148	0.48	-0.4
3,736,780	-		Sama_3148	0.48	-0.2
3,736,780	-		Sama_3148	0.48	-1.8
3,736,780	-		Sama_3148	0.48	-1.8
3,736,874	-		Sama_3148	0.59	-1.7
3,736,888	+		Sama_3148	0.60	-0.8
3,736,888	+		Sama_3148	0.60	-1.9
3,736,889	-		Sama_3148	0.61	-1.2
3,736,889	-		Sama_3148	0.61	-0.9
3,736,889	-		Sama_3148	0.61	+0.3
3,736,926	+		Sama_3148	0.65	-1.7
3,736,965	+		Sama_3148	0.69	-2.8
3,736,966	-		Sama_3148	0.69	-0.8
3,736,966	-		Sama_3148	0.69	-1.8
3,736,966	-		Sama_3148	0.69	-0.5
3,736,966	-		Sama_3148	0.69	-2.0
3,736,966	-		Sama_3148	0.69	-2.7
3,736,966	-		Sama_3148	0.69	-1.0
3,736,968	+		Sama_3148	0.70	-1.5
3,736,968	+		Sama_3148	0.70	-0.7
3,736,968	+		Sama_3148	0.70	-2.2
3,736,969	-		Sama_3148	0.70	-0.8
3,736,969	-		Sama_3148	0.70	+0.3
3,736,969	-		Sama_3148	0.70	-2.2
3,737,015	+		Sama_3148	0.75	-2.7
3,737,015	+		Sama_3148	0.75	-1.2
3,737,072	+		Sama_3148	0.82	-2.4
3,737,073	-		Sama_3148	0.82	-0.4
3,737,158	-				+0.8
3,737,168	-				-0.4
3,737,168	-				-1.2
3,737,180	+				+1.2
3,737,234	+				-0.8
3,737,234	+				-1.2
3,737,235	-				-0.4
3,737,235	-				-1.1
3,737,235	-				-2.8
3,737,235	-				-0.0
3,737,263	+				+0.2
3,737,263	+				-0.8
3,737,263	+				-1.4
3,737,264	-				+0.7
3,737,264	-				-0.9
3,737,264	-				-1.4
3,737,265	+				+0.1
3,737,265	+				-1.0
3,737,265	+				-3.5
3,737,265	+				-1.8
3,737,265	+				-1.2
3,737,265	+				-0.4
3,737,266	-				-0.6
3,737,266	-				-0.7
3,737,266	-				-1.1
3,737,266	-				-0.7
3,737,266	-				-0.2
3,737,266	-				+0.2
3,737,266	-				+0.6
3,737,296	+				-0.4
3,737,310	+				-2.3
3,737,313	-				-0.2
3,737,413	+				+0.6
3,737,414	-				-1.4
3,737,414	-				-0.5
3,737,478	+				-0.7
3,737,479	-				-0.3
3,737,497	+				+2.2
3,737,497	+				-0.4
3,737,497	+				-0.4
3,737,497	+				+0.2
3,737,497	+				+0.5
3,737,497	+				-0.3
3,737,497	+				-0.7
3,737,497	+				+0.6
3,737,497	+				-0.9
3,737,498	-				-0.9
3,737,498	-				+0.9
3,737,498	-				-0.4
3,737,498	-				-0.6
3,737,498	-				-1.2
3,737,498	-				+0.2
3,737,498	-				+0.3
3,737,498	-				+1.2
3,737,498	-				-0.2
3,737,502	+				+0.2
3,737,517	+				+0.0
3,737,531	+		Sama_3149	0.11	-0.1
3,737,588	+		Sama_3149	0.18	+0.2
3,737,664	+		Sama_3149	0.28	+0.8
3,737,664	+		Sama_3149	0.28	+0.3
3,737,665	-		Sama_3149	0.28	-0.2
3,737,665	-		Sama_3149	0.28	-0.4
3,737,665	-		Sama_3149	0.28	-0.1
3,737,759	+		Sama_3149	0.41	-0.8
3,737,893	+		Sama_3149	0.58	-0.3
3,737,893	+		Sama_3149	0.58	+0.0
3,737,894	-		Sama_3149	0.58	-0.1
3,737,894	-		Sama_3149	0.58	+0.1
3,737,895	+		Sama_3149	0.58	+0.2
3,737,934	+		Sama_3149	0.63	-0.3
3,737,945	-		Sama_3149	0.65	+0.3
3,737,945	-		Sama_3149	0.65	+0.2
3,737,945	-		Sama_3149	0.65	-0.4
3,737,945	-		Sama_3149	0.65	-1.0
3,737,945	-		Sama_3149	0.65	+0.2
3,737,945	-		Sama_3149	0.65	-0.8
3,737,945	-		Sama_3149	0.65	+0.9
3,737,948	+		Sama_3149	0.65	-0.6
3,737,948	+		Sama_3149	0.65	-0.0
3,737,948	+		Sama_3149	0.65	+0.6
3,737,948	+		Sama_3149	0.65	-0.1
3,737,948	+		Sama_3149	0.65	+0.3
3,737,948	+		Sama_3149	0.65	+0.3
3,737,948	+		Sama_3149	0.65	-0.6
3,737,948	+		Sama_3149	0.65	-0.0
3,737,949	-		Sama_3149	0.65	-1.2
3,737,949	-		Sama_3149	0.65	-0.4
3,737,949	-		Sama_3149	0.65	+0.2
3,737,949	-		Sama_3149	0.65	+0.7
3,737,949	-		Sama_3149	0.65	-0.5
3,737,949	-		Sama_3149	0.65	-0.4
3,737,949	-		Sama_3149	0.65	-0.7
3,737,949	-		Sama_3149	0.65	+1.2
3,737,949	-		Sama_3149	0.65	-0.6
3,737,949	-		Sama_3149	0.65	+0.9
3,737,949	-		Sama_3149	0.65	-0.3
3,737,962	-		Sama_3149	0.67	+0.1
3,737,977	-		Sama_3149	0.69	+0.4
3,738,082	+		Sama_3149	0.82	+1.4
3,738,082	+		Sama_3149	0.82	+1.0
3,738,083	-		Sama_3149	0.83	-0.7
3,738,083	-		Sama_3149	0.83	-2.0
3,738,083	-		Sama_3149	0.83	+0.5
3,738,083	-		Sama_3149	0.83	-0.7
3,738,113	-		Sama_3149	0.87	+1.3
3,738,113	-		Sama_3149	0.87	-1.3
3,738,148	+				-0.8
3,738,148	+				+0.2
3,738,149	-				-0.7
3,738,149	-				-2.0
3,738,184	+				-1.3
3,738,184	+				-1.0
3,738,185	-				-1.4
3,738,214	+				+0.3
3,738,214	+				+0.5
3,738,214	+				-0.5
3,738,215	-				-1.7