Strain Fitness in Shewanella amazonensis SB2B around Sama_2968

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
3,532,992	-		Sama_2967	0.54	+1.8
3,533,041	+		Sama_2967	0.56	+0.3
3,533,042	-		Sama_2967	0.56	+0.4
3,533,042	-		Sama_2967	0.56	+0.5
3,533,042	-		Sama_2967	0.56	+0.1
3,533,054	+		Sama_2967	0.57	-0.3
3,533,054	+		Sama_2967	0.57	-0.1
3,533,054	+		Sama_2967	0.57	-0.7
3,533,054	+		Sama_2967	0.57	-1.5
3,533,054	+		Sama_2967	0.57	-0.4
3,533,055	-		Sama_2967	0.57	+0.5
3,533,055	-		Sama_2967	0.57	-0.9
3,533,055	-		Sama_2967	0.57	-0.7
3,533,055	-		Sama_2967	0.57	+0.7
3,533,055	-		Sama_2967	0.57	-0.3
3,533,085	+		Sama_2967	0.58	-2.0
3,533,086	-		Sama_2967	0.59	-1.5
3,533,086	-		Sama_2967	0.59	-0.1
3,533,219	-		Sama_2967	0.65	-0.6
3,533,246	+		Sama_2967	0.66	+0.3
3,533,246	+		Sama_2967	0.66	-1.4
3,533,246	+		Sama_2967	0.66	+0.1
3,533,246	+		Sama_2967	0.66	+0.4
3,533,259	+		Sama_2967	0.67	-0.3
3,533,280	+		Sama_2967	0.68	+0.1
3,533,280	+		Sama_2967	0.68	+0.5
3,533,280	+		Sama_2967	0.68	-0.0
3,533,280	+		Sama_2967	0.68	-0.8
3,533,280	+		Sama_2967	0.68	-1.5
3,533,280	+		Sama_2967	0.68	-0.8
3,533,280	+		Sama_2967	0.68	-0.8
3,533,280	+		Sama_2967	0.68	+0.3
3,533,280	+		Sama_2967	0.68	+0.3
3,533,280	+		Sama_2967	0.68	+0.9
3,533,280	+		Sama_2967	0.68	-0.7
3,533,280	+		Sama_2967	0.68	+1.3
3,533,281	-		Sama_2967	0.68	-1.0
3,533,281	-		Sama_2967	0.68	-0.4
3,533,281	-		Sama_2967	0.68	-0.5
3,533,281	-		Sama_2967	0.68	-1.5
3,533,281	-		Sama_2967	0.68	+0.1
3,533,281	-		Sama_2967	0.68	+0.3
3,533,281	-		Sama_2967	0.68	+0.7
3,533,281	-		Sama_2967	0.68	+0.1
3,533,281	-		Sama_2967	0.68	-0.5
3,533,281	-		Sama_2967	0.68	-1.3
3,533,281	-		Sama_2967	0.68	+0.2
3,533,281	-		Sama_2967	0.68	+0.0
3,533,281	-		Sama_2967	0.68	-0.3
3,533,281	-		Sama_2967	0.68	+0.5
3,533,281	-		Sama_2967	0.68	-0.4
3,533,281	-		Sama_2967	0.68	-1.5
3,533,281	-		Sama_2967	0.68	+1.1
3,533,281	-		Sama_2967	0.68	+2.3
3,533,281	-		Sama_2967	0.68	-1.3
3,533,281	-		Sama_2967	0.68	+1.1
3,533,281	-		Sama_2967	0.68	-1.3
3,533,281	-		Sama_2967	0.68	+0.6
3,533,281	-		Sama_2967	0.68	+0.3
3,533,281	-		Sama_2967	0.68	-1.1
3,533,281	-		Sama_2967	0.68	-0.9
3,533,281	-		Sama_2967	0.68	+0.1
3,533,325	+		Sama_2967	0.70	-0.7
3,533,325	+		Sama_2967	0.70	+0.1
3,533,325	+		Sama_2967	0.70	+0.4
3,533,349	+		Sama_2967	0.72	-0.4
3,533,349	+		Sama_2967	0.72	-0.5
3,533,349	+		Sama_2967	0.72	+1.5
3,533,349	+		Sama_2967	0.72	+0.3
3,533,349	+		Sama_2967	0.72	+2.1
3,533,349	+		Sama_2967	0.72	-0.7
3,533,350	-		Sama_2967	0.72	-0.7
3,533,350	-		Sama_2967	0.72	-0.1
3,533,350	-		Sama_2967	0.72	+0.1
3,533,350	-		Sama_2967	0.72	+0.8
3,533,350	-		Sama_2967	0.72	-0.7
3,533,350	-		Sama_2967	0.72	+0.7
3,533,350	-		Sama_2967	0.72	+0.3
3,533,367	+		Sama_2967	0.72	+0.6
3,533,376	+		Sama_2967	0.73	-0.5
3,533,376	+		Sama_2967	0.73	-0.4
3,533,376	+		Sama_2967	0.73	+0.3
3,533,376	+		Sama_2967	0.73	-0.6
3,533,376	+		Sama_2967	0.73	-1.7
3,533,376	+		Sama_2967	0.73	-0.8
3,533,377	-		Sama_2967	0.73	+0.8
3,533,377	-		Sama_2967	0.73	-0.1
3,533,377	-		Sama_2967	0.73	+0.2
3,533,377	-		Sama_2967	0.73	+0.2
3,533,377	-		Sama_2967	0.73	-2.4
3,533,377	-		Sama_2967	0.73	+0.5
3,533,379	+		Sama_2967	0.73	+0.4
3,533,379	+		Sama_2967	0.73	+1.1
3,533,380	-		Sama_2967	0.73	-0.3
3,533,380	-		Sama_2967	0.73	-0.5
3,533,380	-		Sama_2967	0.73	+0.0
3,533,380	-		Sama_2967	0.73	-2.3
3,533,380	-		Sama_2967	0.73	-0.4
3,533,380	-		Sama_2967	0.73	-0.1
3,533,407	+		Sama_2967	0.74	+0.1
3,533,408	-		Sama_2967	0.74	+0.8
3,533,425	+		Sama_2967	0.75	-0.3
3,533,425	+		Sama_2967	0.75	+1.4
3,533,425	+		Sama_2967	0.75	-0.1
3,533,425	+		Sama_2967	0.75	+0.2
3,533,426	-		Sama_2967	0.75	+0.4
3,533,426	-		Sama_2967	0.75	+1.4
3,533,458	+		Sama_2967	0.77	-1.0
3,533,458	+		Sama_2967	0.77	+0.8
3,533,472	+		Sama_2967	0.78	+0.5
3,533,479	+		Sama_2967	0.78	-0.4
3,533,479	+		Sama_2967	0.78	-0.6
3,533,479	+		Sama_2967	0.78	-1.7
3,533,480	-		Sama_2967	0.78	+0.2
3,533,480	-		Sama_2967	0.78	+0.4
3,533,480	-		Sama_2967	0.78	-0.1
3,533,480	-		Sama_2967	0.78	-0.5
3,533,483	+		Sama_2967	0.78	+0.1
3,533,483	+		Sama_2967	0.78	+0.0
3,533,484	-		Sama_2967	0.78	-1.3
3,533,540	+		Sama_2967	0.81	-0.3
3,533,540	+		Sama_2967	0.81	-0.3
3,533,540	+		Sama_2967	0.81	-0.5
3,533,541	-		Sama_2967	0.81	+0.9
3,533,541	-		Sama_2967	0.81	-0.9
3,533,541	-		Sama_2967	0.81	-0.3
3,533,612	+		Sama_2967	0.85	+0.1
3,533,612	+		Sama_2967	0.85	-0.3
3,533,613	-		Sama_2967	0.85	+0.1
3,533,678	-		Sama_2967	0.88	-0.0
3,533,735	+				+0.1
3,533,736	-				-0.5
3,533,736	-				+0.4
3,533,736	-				+1.3
3,533,797	-				+0.2
3,533,797	-				-1.4
3,533,829	-				-0.1
3,533,832	+				+0.0
3,533,832	+				-1.2
3,533,832	+				-0.5
3,533,832	+				-0.8
3,533,832	+				+0.1
3,533,833	-				-0.2
3,533,833	-				-0.2
3,533,833	-				-0.1
3,533,835	+				-0.9
3,533,836	-				-0.9
3,533,836	-				+0.4
3,533,861	+				+1.1
3,533,864	-				-0.3
3,533,909	+				+0.4
3,533,910	-				+0.3
3,533,910	-				+0.6
3,533,916	-				+0.1
3,533,916	-				+0.5
3,533,916	-				+0.5
3,533,916	-				+0.3
3,533,916	-				-0.3
3,533,968	+				-0.5
3,533,968	+				-0.5
3,533,969	-				+0.4
3,534,017	+				+0.2
3,534,017	+				-0.3
3,534,017	+				-0.7
3,534,018	-				-0.0
3,534,018	-				-0.3
3,534,018	-				-0.0
3,534,018	-				-0.1
3,534,018	-				+0.2
3,534,018	-				+0.5
3,534,075	+		Sama_2968	0.12	-0.6
3,534,076	-		Sama_2968	0.13	+0.7
3,534,076	-		Sama_2968	0.13	+1.3
3,534,076	-		Sama_2968	0.13	+0.2
3,534,113	+		Sama_2968	0.16	+1.7
3,534,113	+		Sama_2968	0.16	+0.0
3,534,114	-		Sama_2968	0.16	+0.8
3,534,130	+		Sama_2968	0.17	-0.1
3,534,159	-		Sama_2968	0.20	+0.3
3,534,159	-		Sama_2968	0.20	-0.5
3,534,286	+		Sama_2968	0.31	+2.1
3,534,293	+		Sama_2968	0.32	-0.0
3,534,293	+		Sama_2968	0.32	+0.4
3,534,293	+		Sama_2968	0.32	-0.5
3,534,294	-		Sama_2968	0.32	-0.2
3,534,294	-		Sama_2968	0.32	+0.2
3,534,423	+		Sama_2968	0.43	+0.1
3,534,423	+		Sama_2968	0.43	-0.5
3,534,423	+		Sama_2968	0.43	+0.4
3,534,423	+		Sama_2968	0.43	-1.4
3,534,424	-		Sama_2968	0.43	-0.5
3,534,424	-		Sama_2968	0.43	-0.9
3,534,424	-		Sama_2968	0.43	+1.6
3,534,424	-		Sama_2968	0.43	-0.2
3,534,424	-		Sama_2968	0.43	+1.5
3,534,424	-		Sama_2968	0.43	-0.2
3,534,424	-		Sama_2968	0.43	+0.5
3,534,424	-		Sama_2968	0.43	+0.1
3,534,425	+		Sama_2968	0.43	-0.7
3,534,425	+		Sama_2968	0.43	-1.5
3,534,425	+		Sama_2968	0.43	+0.1
3,534,426	-		Sama_2968	0.44	+0.4
3,534,426	-		Sama_2968	0.44	-0.7
3,534,426	-		Sama_2968	0.44	+0.9
3,534,426	-		Sama_2968	0.44	+1.4
3,534,426	-		Sama_2968	0.44	+0.1
3,534,426	-		Sama_2968	0.44	-0.2
3,534,426	-		Sama_2968	0.44	+1.1
3,534,481	+		Sama_2968	0.48	-1.2
3,534,481	+		Sama_2968	0.48	+0.3
3,534,481	+		Sama_2968	0.48	-0.6
3,534,481	+		Sama_2968	0.48	-0.1
3,534,481	+		Sama_2968	0.48	-1.2
3,534,481	+		Sama_2968	0.48	-0.3
3,534,481	+		Sama_2968	0.48	-1.2
3,534,481	+		Sama_2968	0.48	-0.7
3,534,481	+		Sama_2968	0.48	+0.5
3,534,481	+		Sama_2968	0.48	-0.5
3,534,481	+		Sama_2968	0.48	+0.4
3,534,481	+		Sama_2968	0.48	-0.1
3,534,482	-		Sama_2968	0.48	-0.5
3,534,482	-		Sama_2968	0.48	-0.1
3,534,482	-		Sama_2968	0.48	-0.4
3,534,482	-		Sama_2968	0.48	+0.0
3,534,482	-		Sama_2968	0.48	+0.2
3,534,482	-		Sama_2968	0.48	+0.2
3,534,525	+		Sama_2968	0.52	-0.0
3,534,525	+		Sama_2968	0.52	-0.2
3,534,526	-		Sama_2968	0.52	-0.5
3,534,526	-		Sama_2968	0.52	+2.1
3,534,526	-		Sama_2968	0.52	-1.3
3,534,526	-		Sama_2968	0.52	-0.5
3,534,526	-		Sama_2968	0.52	-0.0
3,534,611	-		Sama_2968	0.60	-0.5
3,534,641	+		Sama_2968	0.63	+0.5
3,534,642	-		Sama_2968	0.63	+0.2
3,534,642	-		Sama_2968	0.63	+0.7
3,534,642	-		Sama_2968	0.63	+0.1
3,534,750	+		Sama_2968	0.72	-0.5
3,534,751	-		Sama_2968	0.72	-0.3
3,534,751	-		Sama_2968	0.72	+0.1
3,534,751	-		Sama_2968	0.72	-0.0
3,534,751	-		Sama_2968	0.72	+0.7
3,534,751	-		Sama_2968	0.72	-0.1
3,534,783	+		Sama_2968	0.75	-0.7
3,534,783	+		Sama_2968	0.75	-0.6
3,534,783	+		Sama_2968	0.75	-0.2
3,534,783	+		Sama_2968	0.75	-1.5
3,534,783	+		Sama_2968	0.75	-0.7
3,534,783	+		Sama_2968	0.75	+0.2
3,534,783	+		Sama_2968	0.75	+1.1
3,534,783	+		Sama_2968	0.75	-0.0
3,534,784	-		Sama_2968	0.75	-0.4
3,534,784	-		Sama_2968	0.75	-0.5
3,534,784	-		Sama_2968	0.75	+0.6
3,534,784	-		Sama_2968	0.75	-0.7
3,534,784	-		Sama_2968	0.75	-0.5
3,534,784	-		Sama_2968	0.75	-1.4
3,534,784	-		Sama_2968	0.75	-2.1
3,534,803	+		Sama_2968	0.77	-1.6
3,534,812	+		Sama_2968	0.78	+0.1
3,534,812	+		Sama_2968	0.78	-1.3
3,534,812	+		Sama_2968	0.78	-0.1
3,534,813	-		Sama_2968	0.78	-0.6
3,534,836	+		Sama_2968	0.80	-1.3
3,534,843	+		Sama_2968	0.80	+0.2
3,534,878	-		Sama_2968	0.83	-0.1
3,534,878	-		Sama_2968	0.83	-0.4
3,534,885	+		Sama_2968	0.84	+1.1
3,534,886	-		Sama_2968	0.84	+0.5
3,534,892	+		Sama_2968	0.85	-0.4
3,534,893	-		Sama_2968	0.85	+0.3
3,534,893	-		Sama_2968	0.85	-1.0
3,534,965	-				-1.9
3,535,006	+				+1.9
3,535,007	-				-0.7
3,535,007	-				+0.4
3,535,007	-				+1.2
3,535,077	-				+0.1
3,535,097	-				-1.3
3,535,123	+				-0.2
3,535,123	+				-0.1
3,535,123	+				-0.4
3,535,123	+				-0.2
3,535,124	-				-0.0
3,535,124	-				-0.5
3,535,124	-				+0.5
3,535,124	-				-0.3
3,535,144	+				-0.5
3,535,144	+				-1.8
3,535,144	+				-0.7
3,535,144	+				+0.1
3,535,144	+				+0.5
3,535,144	+				+1.1
3,535,149	-				-0.5
3,535,149	-				-0.9
3,535,149	-				+0.1
3,535,242	-		Sama_2969	0.11	+0.4
3,535,262	+		Sama_2969	0.14	+0.1
3,535,262	+		Sama_2969	0.14	-0.2
3,535,262	+		Sama_2969	0.14	+0.2
3,535,263	-		Sama_2969	0.15	-0.6
3,535,263	-		Sama_2969	0.15	-0.8
3,535,263	-		Sama_2969	0.15	-0.7
3,535,263	-		Sama_2969	0.15	+1.7
3,535,406	+		Sama_2969	0.36	+0.2
3,535,406	+		Sama_2969	0.36	+0.1
3,535,406	+		Sama_2969	0.36	-0.2
3,535,407	-		Sama_2969	0.36	+0.2
3,535,407	-		Sama_2969	0.36	-2.5
3,535,407	-		Sama_2969	0.36	+1.5
3,535,407	-		Sama_2969	0.36	+0.1
3,535,409	+		Sama_2969	0.36	+1.5
3,535,409	+		Sama_2969	0.36	-0.1
3,535,409	+		Sama_2969	0.36	+0.3
3,535,409	+		Sama_2969	0.36	-0.3
3,535,410	-		Sama_2969	0.36	+0.8
3,535,423	-		Sama_2969	0.38	+0.5
3,535,491	-		Sama_2969	0.48	-1.9
3,535,491	-		Sama_2969	0.48	+0.1
3,535,491	-		Sama_2969	0.48	+0.6
3,535,522	+		Sama_2969	0.53	-0.5
3,535,523	-		Sama_2969	0.53	+0.7
3,535,559	+		Sama_2969	0.58	+0.1
3,535,681	+		Sama_2969	0.76	+1.1
3,535,682	-		Sama_2969	0.77	+0.1
3,535,682	-		Sama_2969	0.77	-1.9
3,535,682	-		Sama_2969	0.77	-0.7
3,535,758	+		Sama_2969	0.88	-0.7
3,535,800	-				-0.0
3,535,806	+				+0.1
3,535,860	+				+1.1
3,535,946	+				+0.5
3,535,952	+				-2.7
3,535,953	-				+0.8
3,535,961	-				+0.3
3,535,961	-				-0.3
3,535,963	+				-0.4
3,535,963	+				-1.1
3,535,963	+				-2.4
3,535,964	-				+0.3
3,535,965	+				+0.1
3,535,965	+				+0.3
3,535,965	+				-0.6
3,535,965	+				-0.9
3,535,965	+				-1.4
3,535,965	+				+1.1
3,535,965	+				+0.5
3,535,966	-				+1.2
3,535,966	-				-0.7
3,535,966	-				+0.8
3,535,966	-				+1.5
3,535,966	-				-0.2
3,535,970	-				-0.4
3,535,996	+				-0.6
3,535,996	+				-1.1
3,535,996	+				-0.1
3,535,997	-				-0.6
3,535,997	-				-0.8