Strain Fitness in Shewanella amazonensis SB2B around Sama_2602

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
3,113,230	+		Sama_2600	0.59	-1.4
3,113,230	+		Sama_2600	0.59	-0.8
3,113,231	-		Sama_2600	0.59	-0.3
3,113,231	-		Sama_2600	0.59	-0.6
3,113,249	+		Sama_2600	0.61	+0.9
3,113,249	+		Sama_2600	0.61	-0.3
3,113,249	+		Sama_2600	0.61	+0.5
3,113,249	+		Sama_2600	0.61	-0.5
3,113,249	+		Sama_2600	0.61	-0.4
3,113,250	-		Sama_2600	0.61	-0.7
3,113,250	-		Sama_2600	0.61	-3.4
3,113,250	-		Sama_2600	0.61	-0.7
3,113,250	-		Sama_2600	0.61	-2.9
3,113,250	-		Sama_2600	0.61	-0.7
3,113,250	-		Sama_2600	0.61	-1.3
3,113,250	-		Sama_2600	0.61	-0.9
3,113,250	-		Sama_2600	0.61	+0.5
3,113,251	+		Sama_2600	0.61	+0.2
3,113,251	+		Sama_2600	0.61	-1.3
3,113,251	+		Sama_2600	0.61	-0.6
3,113,251	+		Sama_2600	0.61	-0.3
3,113,251	+		Sama_2600	0.61	-0.8
3,113,251	+		Sama_2600	0.61	-0.7
3,113,251	+		Sama_2600	0.61	-2.4
3,113,251	+		Sama_2600	0.61	-1.1
3,113,251	+		Sama_2600	0.61	-0.7
3,113,251	+		Sama_2600	0.61	-1.1
3,113,252	-		Sama_2600	0.61	-1.4
3,113,252	-		Sama_2600	0.61	+0.7
3,113,252	-		Sama_2600	0.61	-0.3
3,113,252	-		Sama_2600	0.61	+0.9
3,113,252	-		Sama_2600	0.61	+0.3
3,113,252	-		Sama_2600	0.61	-1.0
3,113,252	-		Sama_2600	0.61	+0.0
3,113,252	-		Sama_2600	0.61	-1.1
3,113,253	+		Sama_2600	0.62	-0.4
3,113,253	+		Sama_2600	0.62	-0.6
3,113,253	+		Sama_2600	0.62	-2.1
3,113,253	+		Sama_2600	0.62	+1.0
3,113,253	+		Sama_2600	0.62	-0.1
3,113,253	+		Sama_2600	0.62	-0.7
3,113,253	+		Sama_2600	0.62	-0.4
3,113,254	-		Sama_2600	0.62	+0.3
3,113,254	-		Sama_2600	0.62	-0.7
3,113,254	-		Sama_2600	0.62	-0.9
3,113,254	-		Sama_2600	0.62	-1.7
3,113,254	-		Sama_2600	0.62	+0.5
3,113,254	-		Sama_2600	0.62	-1.0
3,113,301	+		Sama_2600	0.67	+0.1
3,113,302	-		Sama_2600	0.67	-1.1
3,113,302	-		Sama_2600	0.67	-0.8
3,113,302	-		Sama_2600	0.67	-0.3
3,113,303	+		Sama_2600	0.67	-0.3
3,113,303	+		Sama_2600	0.67	-0.9
3,113,303	+		Sama_2600	0.67	-0.3
3,113,303	+		Sama_2600	0.67	-0.0
3,113,303	+		Sama_2600	0.67	+0.9
3,113,303	+		Sama_2600	0.67	-1.7
3,113,303	+		Sama_2600	0.67	+0.0
3,113,303	+		Sama_2600	0.67	+0.3
3,113,303	+		Sama_2600	0.67	-2.4
3,113,304	-		Sama_2600	0.67	-1.5
3,113,304	-		Sama_2600	0.67	-1.1
3,113,308	+		Sama_2600	0.68	+0.9
3,113,308	+		Sama_2600	0.68	+0.9
3,113,308	+		Sama_2600	0.68	+0.5
3,113,309	-		Sama_2600	0.68	-1.4
3,113,358	-		Sama_2600	0.74	-1.3
3,113,382	+		Sama_2600	0.77	-0.9
3,113,482	+		Sama_2600	0.88	-1.1
3,113,489	+		Sama_2600	0.89	-1.0
3,113,489	+		Sama_2600	0.89	-0.5
3,113,489	+		Sama_2600	0.89	-0.6
3,113,490	-		Sama_2600	0.89	-2.1
3,113,490	-		Sama_2600	0.89	-0.5
3,113,490	-		Sama_2600	0.89	-1.9
3,113,518	-				-0.1
3,113,518	-				-0.9
3,113,526	+				-0.6
3,113,537	+				+1.3
3,113,538	-				+0.5
3,113,538	-				-1.6
3,113,541	+				-1.8
3,113,542	-				-1.4
3,113,555	-				-2.4
3,113,580	+				+0.5
3,113,595	+				-1.3
3,113,595	+				-0.7
3,113,596	-				-2.6
3,113,600	+				+1.1
3,113,601	-				+1.2
3,113,601	-				+1.4
3,113,615	+				-0.3
3,113,615	+				-2.1
3,113,616	-				-1.1
3,113,616	-				-0.6
3,113,616	-				-0.4
3,113,616	-				+0.7
3,113,648	+				+0.5
3,113,677	+				+2.5
3,113,677	+				-0.2
3,113,687	+				+0.4
3,113,699	+				+0.8
3,113,715	+		Sama_2601	0.11	+0.6
3,113,716	-		Sama_2601	0.11	+0.1
3,113,717	+		Sama_2601	0.11	+0.5
3,113,717	+		Sama_2601	0.11	+3.2
3,113,717	+		Sama_2601	0.11	+0.2
3,113,717	+		Sama_2601	0.11	-0.2
3,113,717	+		Sama_2601	0.11	-0.1
3,113,717	+		Sama_2601	0.11	-0.1
3,113,718	-		Sama_2601	0.12	-0.8
3,113,718	-		Sama_2601	0.12	-0.1
3,113,718	-		Sama_2601	0.12	-0.3
3,113,733	+		Sama_2601	0.15	-0.6
3,113,733	+		Sama_2601	0.15	-0.4
3,113,734	-		Sama_2601	0.15	+1.2
3,113,734	-		Sama_2601	0.15	-1.4
3,113,737	+		Sama_2601	0.16	-1.1
3,113,737	+		Sama_2601	0.16	-1.2
3,113,738	-		Sama_2601	0.16	+0.3
3,113,738	-		Sama_2601	0.16	-0.1
3,113,738	-		Sama_2601	0.16	-0.4
3,113,738	-		Sama_2601	0.16	+0.1
3,113,739	+		Sama_2601	0.16	+0.3
3,113,739	+		Sama_2601	0.16	-0.9
3,113,739	+		Sama_2601	0.16	+0.0
3,113,739	+		Sama_2601	0.16	+0.0
3,113,740	-		Sama_2601	0.16	+1.6
3,113,740	-		Sama_2601	0.16	+0.0
3,113,751	+		Sama_2601	0.19	+0.1
3,113,752	-		Sama_2601	0.19	+0.3
3,113,752	-		Sama_2601	0.19	+0.6
3,113,888	+		Sama_2601	0.49	+1.3
3,113,981	+		Sama_2601	0.69	+0.6
3,113,981	+		Sama_2601	0.69	+0.6
3,113,981	+		Sama_2601	0.69	+0.9
3,113,981	+		Sama_2601	0.69	+0.2
3,113,981	+		Sama_2601	0.69	-0.7
3,113,982	-		Sama_2601	0.70	-0.6
3,113,982	-		Sama_2601	0.70	+1.2
3,113,982	-		Sama_2601	0.70	+0.3
3,114,003	-		Sama_2601	0.74	-1.4
3,114,132	+				-0.8
3,114,132	+				+0.7
3,114,133	-				+0.4
3,114,133	-				-0.7
3,114,162	-				+1.9
3,114,162	-				-0.4
3,114,181	-				-0.8
3,114,181	-				-0.0
3,114,181	-				+1.3
3,114,181	-				+0.3
3,114,766	+				-0.7
3,114,779	+				+1.4
3,114,779	+				-0.3
3,114,790	+				+1.6
3,114,790	+				+1.0
3,114,790	+				-0.1
3,114,847	+				+0.4
3,114,848	-				-0.6
3,114,848	-				-0.0
3,114,848	-				+1.3
3,114,848	-				-0.1
3,114,848	-				+0.3
3,114,848	-				+1.3
3,114,931	-				-1.7
3,115,006	-				-0.9
3,115,034	-				+0.1
3,115,034	-				-0.2
3,115,034	-				+0.4
3,115,146	+				+0.6
3,115,146	+				+0.7
3,115,146	+				-0.4
3,115,147	-				-0.1
3,115,147	-				-1.4
3,115,147	-				-0.4
3,115,147	-				+2.3
3,115,230	+		Sama_2603	0.13	+0.9
3,115,231	-		Sama_2603	0.13	+0.3
3,115,268	-		Sama_2603	0.15	-0.3
3,115,296	-		Sama_2603	0.16	+0.7
3,115,335	-		Sama_2603	0.17	-2.6
3,115,457	-		Sama_2603	0.22	-0.2
3,115,510	+		Sama_2603	0.24	-0.7
3,115,568	+		Sama_2603	0.26	+0.1
3,115,568	+		Sama_2603	0.26	-0.3
3,115,569	-		Sama_2603	0.26	+0.2
3,115,569	-		Sama_2603	0.26	+1.3
3,115,569	-		Sama_2603	0.26	+0.4
3,115,569	-		Sama_2603	0.26	+0.2
3,115,622	+		Sama_2603	0.28	-0.3
3,115,622	+		Sama_2603	0.28	+1.0
3,115,623	-		Sama_2603	0.28	+0.1
3,115,623	-		Sama_2603	0.28	-0.4