Strain Fitness in Shewanella amazonensis SB2B around Sama_1523

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
1,850,774	+		Sama_1521	0.19	-0.3
1,850,774	+		Sama_1521	0.19	-0.0
1,850,775	-		Sama_1521	0.19	-0.5
1,850,776	+		Sama_1521	0.19	+0.1
1,850,906	+		Sama_1521	0.42	-0.2
1,850,906	+		Sama_1521	0.42	+0.7
1,850,909	+		Sama_1521	0.43	+0.2
1,850,909	+		Sama_1521	0.43	-0.5
1,850,909	+		Sama_1521	0.43	+0.2
1,851,032	-		Sama_1521	0.65	+0.3
1,851,118	+		Sama_1521	0.80	-0.9
1,851,155	+		Sama_1521	0.87	+0.2
1,851,155	+		Sama_1521	0.87	+0.2
1,851,155	+		Sama_1521	0.87	-0.6
1,851,155	+		Sama_1521	0.87	+0.2
1,851,156	-		Sama_1521	0.87	-0.9
1,851,156	-		Sama_1521	0.87	-0.9
1,851,210	-				+0.2
1,851,224	+				+0.0
1,851,230	+				+0.7
1,851,230	+				+0.1
1,851,230	+				+0.1
1,851,230	+				+1.7
1,851,230	+				-0.1
1,851,230	+				-0.8
1,851,230	+				+0.2
1,851,230	+				-0.0
1,851,230	+				+0.4
1,851,230	+				-1.9
1,851,231	-				-0.3
1,851,231	-				-1.4
1,851,231	-				-0.4
1,851,231	-				+0.4
1,851,268	+				+0.7
1,851,276	+				-0.6
1,851,277	-				+0.2
1,851,282	+				-2.2
1,851,302	-				-0.9
1,851,399	-				+0.7
1,851,432	-				+0.2
1,851,453	-				+1.1
1,851,459	+				-0.4
1,851,571	+		Sama_1522	0.33	-0.3
1,851,670	-		Sama_1522	0.70	+0.2
1,851,670	-		Sama_1522	0.70	+1.0
1,851,696	+		Sama_1522	0.80	-0.4
1,851,696	+		Sama_1522	0.80	-0.2
1,851,723	-				-0.1
1,851,730	-				-0.3
1,851,769	+				+0.7
1,851,782	+				+0.2
1,851,782	+				+0.1
1,851,782	+				+0.1
1,851,783	-				+0.2
1,851,812	+				-1.2
1,851,812	+				+1.0
1,851,812	+				+2.7
1,851,812	+				+0.0
1,851,812	+				-0.9
1,851,813	-				+0.2
1,851,813	-				-0.5
1,851,813	-				+0.2
1,851,814	+				-0.6
1,851,860	+				+1.1
1,851,861	-				-1.3
1,851,861	-				-0.9
1,851,861	-				+1.0
1,851,864	+				+0.9
1,851,937	+		Sama_1523	0.10	+0.5
1,851,938	-		Sama_1523	0.10	+0.7
1,851,952	+		Sama_1523	0.11	+0.4
1,851,986	+		Sama_1523	0.13	+0.6
1,851,986	+		Sama_1523	0.13	+0.1
1,851,987	-		Sama_1523	0.13	+0.2
1,851,987	-		Sama_1523	0.13	-1.7
1,851,987	-		Sama_1523	0.13	+0.7
1,851,987	-		Sama_1523	0.13	-0.8
1,851,987	-		Sama_1523	0.13	+0.1
1,852,010	+		Sama_1523	0.14	+0.2
1,852,010	+		Sama_1523	0.14	+0.4
1,852,010	+		Sama_1523	0.14	+0.1
1,852,010	+		Sama_1523	0.14	-2.1
1,852,010	+		Sama_1523	0.14	-1.3
1,852,011	-		Sama_1523	0.15	-1.1
1,852,011	-		Sama_1523	0.15	+0.1
1,852,031	-		Sama_1523	0.16	-0.5
1,852,041	-		Sama_1523	0.16	+1.1
1,852,041	-		Sama_1523	0.16	-0.7
1,852,049	-		Sama_1523	0.17	+0.1
1,852,063	+		Sama_1523	0.18	+1.1
1,852,068	+		Sama_1523	0.18	+0.3
1,852,091	+		Sama_1523	0.19	+0.5
1,852,091	+		Sama_1523	0.19	+0.2
1,852,092	-		Sama_1523	0.19	-0.3
1,852,094	+		Sama_1523	0.19	+0.4
1,852,094	+		Sama_1523	0.19	+1.9
1,852,095	-		Sama_1523	0.19	-1.7
1,852,151	+		Sama_1523	0.23	-0.3
1,852,151	+		Sama_1523	0.23	-1.0
1,852,151	+		Sama_1523	0.23	-0.7
1,852,151	+		Sama_1523	0.23	+0.5
1,852,153	+		Sama_1523	0.23	-0.1
1,852,224	+		Sama_1523	0.27	+1.1
1,852,226	+		Sama_1523	0.27	+0.1
1,852,226	+		Sama_1523	0.27	+0.1
1,852,226	+		Sama_1523	0.27	+0.1
1,852,226	+		Sama_1523	0.27	-0.6
1,852,226	+		Sama_1523	0.27	+1.5
1,852,226	+		Sama_1523	0.27	+0.7
1,852,227	-		Sama_1523	0.27	+0.7
1,852,227	-		Sama_1523	0.27	-1.1
1,852,227	-		Sama_1523	0.27	+1.2
1,852,235	-		Sama_1523	0.28	-0.0
1,852,253	+		Sama_1523	0.29	-0.2
1,852,253	+		Sama_1523	0.29	-0.3
1,852,254	-		Sama_1523	0.29	-1.1
1,852,279	+		Sama_1523	0.30	-0.3
1,852,280	-		Sama_1523	0.30	+0.2
1,852,286	+		Sama_1523	0.31	+0.7
1,852,286	+		Sama_1523	0.31	+1.3
1,852,286	+		Sama_1523	0.31	+1.5
1,852,286	+		Sama_1523	0.31	+0.1
1,852,287	-		Sama_1523	0.31	-0.7
1,852,305	-		Sama_1523	0.32	-0.5
1,852,316	-		Sama_1523	0.32	+0.5
1,852,433	+		Sama_1523	0.39	-1.3
1,852,433	+		Sama_1523	0.39	+1.1
1,852,433	+		Sama_1523	0.39	+0.3
1,852,433	+		Sama_1523	0.39	-0.1
1,852,433	+		Sama_1523	0.39	+0.5
1,852,434	-		Sama_1523	0.39	+0.1
1,852,463	-		Sama_1523	0.41	-1.1
1,852,485	-		Sama_1523	0.42	-0.5
1,852,573	-		Sama_1523	0.47	-0.1
1,852,597	-		Sama_1523	0.49	+0.2
1,852,642	+		Sama_1523	0.51	+0.1
1,852,642	+		Sama_1523	0.51	-0.9
1,852,643	-		Sama_1523	0.51	-0.3
1,852,643	-		Sama_1523	0.51	+1.0
1,852,643	-		Sama_1523	0.51	-1.1
1,852,733	+		Sama_1523	0.57	+0.7
1,852,734	-		Sama_1523	0.57	+0.6
1,852,781	-		Sama_1523	0.59	-0.2
1,852,817	+		Sama_1523	0.61	+1.2
1,852,817	+		Sama_1523	0.61	+0.0
1,852,817	+		Sama_1523	0.61	+1.2
1,852,817	+		Sama_1523	0.61	-0.9
1,852,817	+		Sama_1523	0.61	-0.4
1,852,817	+		Sama_1523	0.61	-0.8
1,852,818	-		Sama_1523	0.61	+0.7
1,852,820	+		Sama_1523	0.62	-0.7
1,852,820	+		Sama_1523	0.62	-1.1
1,852,951	+		Sama_1523	0.69	-0.3
1,852,951	+		Sama_1523	0.69	+0.2
1,853,051	+		Sama_1523	0.75	-0.1
1,853,051	+		Sama_1523	0.75	-0.9
1,853,052	-		Sama_1523	0.75	-0.3
1,853,130	+		Sama_1523	0.80	+0.1
1,853,130	+		Sama_1523	0.80	+1.4
1,853,130	+		Sama_1523	0.80	-0.1
1,853,130	+		Sama_1523	0.80	-0.7
1,853,131	-		Sama_1523	0.80	+0.5
1,853,251	+		Sama_1523	0.87	-0.2
1,853,262	-		Sama_1523	0.87	-1.3
1,853,271	-		Sama_1523	0.88	-0.9
1,853,283	+		Sama_1523	0.89	+1.4
1,853,284	-		Sama_1523	0.89	+0.7
1,853,339	-				-0.3
1,853,363	-				+1.2
1,853,406	+				+1.7
1,853,490	-				+1.3
1,853,531	-				-1.9
1,853,551	-				-0.1
1,853,583	+				-1.1
1,853,584	-				+0.2
1,853,584	-				+1.2
1,853,584	-				-1.5
1,853,585	+				-0.5
1,853,629	+				-0.0
1,853,741	+				-0.5
1,853,741	+				+1.2
1,853,742	-				-1.2
1,853,745	-				+0.2
1,853,750	-				+0.2
1,853,750	-				-0.0
1,853,795	+				-0.0
1,853,795	+				+0.1
1,853,795	+				+0.7
1,853,795	+				+0.2
1,853,796	-				+1.7
1,853,796	-				-0.9
1,853,796	-				-0.5
1,853,799	+				+0.9
1,853,799	+				+1.4
1,853,799	+				-0.3
1,853,800	-				-1.5
1,853,800	-				+0.5
1,853,945	+		Sama_1524	0.17	-0.3
1,853,962	+		Sama_1524	0.18	+0.5
1,853,963	-		Sama_1524	0.18	+0.4
1,853,963	-		Sama_1524	0.18	-0.3
1,853,977	-		Sama_1524	0.19	+0.7
1,854,117	+		Sama_1524	0.27	+0.4
1,854,117	+		Sama_1524	0.27	+0.7
1,854,117	+		Sama_1524	0.27	-0.7
1,854,118	-		Sama_1524	0.27	-0.3
1,854,118	-		Sama_1524	0.27	+0.5
1,854,135	+		Sama_1524	0.28	+0.7
1,854,135	+		Sama_1524	0.28	-0.9
1,854,135	+		Sama_1524	0.28	-0.1
1,854,135	+		Sama_1524	0.28	+0.1
1,854,135	+		Sama_1524	0.28	-0.2
1,854,135	+		Sama_1524	0.28	-0.6
1,854,135	+		Sama_1524	0.28	-0.7
1,854,135	+		Sama_1524	0.28	-0.3
1,854,327	+		Sama_1524	0.38	-1.7
1,854,327	+		Sama_1524	0.38	-2.7
1,854,362	-		Sama_1524	0.40	+0.2
1,854,468	+		Sama_1524	0.46	+0.0
1,854,469	-		Sama_1524	0.46	+1.4